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Report for Sequence Feature Glyma13g24520

Feature Type:gene_model
Chromosome:Gm13
Start:27872962
stop:27878734
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g24520
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G28380AT Annotation by Michelle Graham. TAIR10: MAC/Perforin domain-containing protein | chr1:9963696-9966060 FORWARD LENGTH=612 SoyBaseE_val: 0ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0006820GO-bp Annotation by Michelle Graham. GO Biological Process: anion transport SoyBaseN/AISS
GO:0006862GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide transport SoyBaseN/AISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0006955GO-bp Annotation by Michelle Graham. GO Biological Process: immune response SoyBaseN/AISS
GO:0006984GO-bp Annotation by Michelle Graham. GO Biological Process: ER-nucleus signaling pathway SoyBaseN/AISS
GO:0008219GO-bp Annotation by Michelle Graham. GO Biological Process: cell death SoyBaseN/AISS
GO:0009595GO-bp Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus SoyBaseN/AISS
GO:0009626GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010337GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of salicylic acid metabolic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0015696GO-bp Annotation by Michelle Graham. GO Biological Process: ammonium transport SoyBaseN/AISS
GO:0015802GO-bp Annotation by Michelle Graham. GO Biological Process: basic amino acid transport SoyBaseN/AISS
GO:0031347GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0043090GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid import SoyBaseN/AISS
GO:0043269GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of ion transport SoyBaseN/AISS
GO:0043900GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process SoyBaseN/AISS
GO:0045087GO-bp Annotation by Michelle Graham. GO Biological Process: innate immune response SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0051707GO-bp Annotation by Michelle Graham. GO Biological Process: response to other organism SoyBaseN/AISS
GO:0052542GO-bp Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR19324Panther COMPLEMENT COMPONENT C6-9 JGI ISS
PTHR19324:SF4Panther COMPLEMENT COMPONENT C6 JGI ISS
PF01823PFAM MAC/Perforin domain JGI ISS
UniRef100_Q9SGN6UniRef Annotation by Michelle Graham. Most informative UniRef hit: MACPF domain-containing protein NSL1 n=1 Tax=Arabidopsis thaliana RepID=NSL1_ARATH SoyBaseE_val: 0ISS
UniRef100_UPI0002338341UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338341 related cluster n=1 Tax=unknown RepID=UPI0002338341 SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g24520
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g24520 not represented in the dataset
Glyma13g24520 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g24520
ParalogEvidenceComments
Glyma07g32010 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g24520 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g176600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g24520
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g24520
>Glyma13g24520.1   sequence type=CDS   gene model=Glyma13g24520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATGATCAATGTGAGCATTGCGGGGTTGGATCCCCAGATGGCTGCAGAAAAAGCTGTGAATGTGATTGGTCAAGGGTATGATCTTTGCAGCGATATAAAGTTCTCGGCTTGTAGAAACAGGTTGATAGAGATCGACAAAACGCATAGTAGAGACCTTGTTTTTCCCGGTGGGGTTGTTGTTTCCGATGTTCCCAGCTCCATCAAGTGTGACAAAGGTGAACGCACCAGGTTTCACTCTGATGTGCTCCCTTTTAATCAGATGTCTGAGCATTTCAACAAACAGATATCCTTGTCTGGAAAGATTCCATCCGGCCAATTTAATATCATGTTCAACATGAAAAAATGTTGGCCTACAGACGCAGCTTCTACTAAAAACCTTGCCTATGATGGATGGTTCATAACATTATATAATGTCGAATTAGATAGAACCAACATAACCCTTTCTGAAAGTGTGAAAAAAGATGTGCCTTATTCATGGAACCCCGCAGCTCTTGCTGAGTTCATTGAAAAATATGGTACCCATATAATAGTTGGGGTGCAGATGGGAGGGAAGGATGTGGTTCATATCAAGCAGACAAAAAATTCAGATTTACAGCAGGCCGAACTGCAGAAATTGCTAAAGCAATTAGCTGATGAGAGGTTTTCTGAGGCTTCAAATCATAGTTCTAATGTCGATCCTGCTGACAAATCAAGAAAAGTAAAGGATAATCGTGCTAAGATGTGGGGGTCCAAACCGATTCCTGTTGCTGGCAGGCCAGTTGTAAGAAATCACTCCAAGAATGATGATATTGTGAGCATTTCTGTTCGAAGAGGGGGTATTGATAATGGTCAATCTTACAACCAATGGCTTTCAACCATATCACAATCTCCTAATGTCATATCAATGTCTTTTGTGCCTATTACTTCCCTGCTGAATTCTGTTCCCGGCAATGGATTTTTAAGTCACGCAATGAATTTGTATCTTAGATATAAACCAGCAATAGAAGAGCTTCATCAATTTCTAGAATTTCAGTTGCCTCGACAATGGGCACCAATGTATGGTGATCTGCCTCTTGGATTCGGCCATAAGTATAAGAAGAGCATGTCCCCATCACTTCAGTTCACTCTCATGGGACCCAAGCTTTATGTTAACACTGTGAAGGTTGACTCTGGAAACCGGCCTGTGACTGGAATTCGCTTATACTTGGAAGGCAAGAAAAGTGACCACCTGGCAATCCATCTTCAGCATCTTTCAGAGGTTCCAGGAGCCCTTGAAATTTCAGAAGATCATGGTTATGATCCCGTGGACGAACCAGAGGAACGAGGCTACTATGAGCCGGTGAAATGGAGCATGTTTTCCCATGTCTACACAGCACCTGTGCAGTACAGTAGCTCCAGCATGGACGAGTCCACGGCCATCGTGACAAAAGCCTGGTTTGAAGTGAAGCTCGTAGGCATGAAGAAAGTCCTTTTCTTGAGACTTGGATTCTCCACGGTAGCATCTGCCACAATTCGCAGATCAGAATGGGATGGACCTTCAACCACGTCGCGAAAGTCAGGATTCTTCTCAGCACTGATGAGTACTAGGCTCAGCAAGGAATTGCAGTCACCAGATCAGAAGCCGAATAAGGTGGATATAAACTCGGCAATTTATAATGTTGGACCACCTGTGCCAACAAGGGTTCCAAAAATGCTTAGTTTTGTGGACACAAAGGAAATGGTTCGAGGTCCTGAGGATACACCAGGGTATTGGGTGGTGACTGGGGCAAAGCTGTGTGTAGAGGGTGGTAGAATCTCAATCAAGGCAAAGTATTCCTTGTTGACTATATTGTCGGAAGAATCTCTGCTGTAG
Predicted protein sequences of Glyma13g24520
>Glyma13g24520.1   sequence type=predicted peptide   gene model=Glyma13g24520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMINVSIAGLDPQMAAEKAVNVIGQGYDLCSDIKFSACRNRLIEIDKTHSRDLVFPGGVVVSDVPSSIKCDKGERTRFHSDVLPFNQMSEHFNKQISLSGKIPSGQFNIMFNMKKCWPTDAASTKNLAYDGWFITLYNVELDRTNITLSESVKKDVPYSWNPAALAEFIEKYGTHIIVGVQMGGKDVVHIKQTKNSDLQQAELQKLLKQLADERFSEASNHSSNVDPADKSRKVKDNRAKMWGSKPIPVAGRPVVRNHSKNDDIVSISVRRGGIDNGQSYNQWLSTISQSPNVISMSFVPITSLLNSVPGNGFLSHAMNLYLRYKPAIEELHQFLEFQLPRQWAPMYGDLPLGFGHKYKKSMSPSLQFTLMGPKLYVNTVKVDSGNRPVTGIRLYLEGKKSDHLAIHLQHLSEVPGALEISEDHGYDPVDEPEERGYYEPVKWSMFSHVYTAPVQYSSSSMDESTAIVTKAWFEVKLVGMKKVLFLRLGFSTVASATIRRSEWDGPSTTSRKSGFFSALMSTRLSKELQSPDQKPNKVDINSAIYNVGPPVPTRVPKMLSFVDTKEMVRGPEDTPGYWVVTGAKLCVEGGRISIKAKYSLLTILSEESLL*






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