SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G05320 | AT | Annotation by Michelle Graham. TAIR10: polyubiquitin 10 | chr4:2718559-2719932 FORWARD LENGTH=457 | SoyBase | E_val: 0 | ISS |
| GO:0006464 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular protein modification process | SoyBase | N/A | ISS |
| GO:0007568 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aging | SoyBase | N/A | ISS |
| GO:0009751 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus | SoyBase | N/A | ISS |
| KOG0005 | KOG | Ubiquitin-like protein | JGI | ISS | |
| PTHR10666 | Panther | UBIQUITIN | JGI | ISS | |
| PF00240 | PFAM | Ubiquitin family | JGI | ISS | |
| UniRef100_G7JDW8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Multidrug resistance protein ABC transporter family n=2 Tax=Medicago truncatula RepID=G7JDW8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M076 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M076_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g24470 not represented in the dataset |
Glyma13g24470 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g176100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g24470.1 sequence type=CDS gene model=Glyma13g24470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAATCTTCGTTAAGACACTCACTGGTAAGACAATCACCCTTGAGGTGGAGAGTTCAGATACCATAGATAATGTAAAGTCCAAGATTCAAGACAAGGAAGGGATCCCACCAGACCAGCAACGTCTCATTTTTGCTGGCAAGCAGCTTGAGGATGGACGTACACTTGCTGATTACAACATCCAAAAGGAGTCCACTCTTCACTTGGTGCTCCGGCTCCGTGGTGGAATGCAAATCTTTGTTAAGACATTGACCGGAAAGACAATCACCCTTGAGGTCGAGAGCTCTGACACCATTGACAATGTTAAGGCTAAGATTCAGGACAAAGAGGGTATCCCACCAGACCAACAAAGGCTTATCTTTGCAGGAAAGCAGCTAGAAGATGGCAGAACCTTGGCTGATTACAATATCCAGAAGGAATCTACCCTCCACTTGGTGCTCCGTCTTCGTGGTGGGATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACAATTACCCTTGAGGTGGAGAGTTCTGACACCATTGACAATGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCCGACCAACAGAGACTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTGCCGATTACAACATTCAGAAAGAGTCCACCCTCCACCTGGTGCTCCGTCTTCGTGGTGGCATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCTGACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAGGATGGCCGTACCCTTGCCGATTACAACATTCAGAAAGAGTCCACCCTCCACCTGGTGCTCCGTCTTCGTGGTGGCATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCTGACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAAGATGGCCGAACCTTGGCAGATTACAACATCCAGAAAGAATCTACCCTCCACTTGGTGCTCCGTCTTCGCGGTGGTATGCAAATCTTTGTGAAGACTCTTACTGGGAAGACCATTACTTTGGAGGTAGAGAGCTCTGACACAATTGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAGCAAAGGTTGATTTTTGCTGGGAAGCAGCTTGAAGATGGACGCACGCTGGCAGACTACAACATTCAAAAGGAGTCTACCCTTCACCTTGTCCTTCGTCTGAGGGGAGGTATGCAGATCTTTGTGAAGACTTTGACAGGAAAAACTATCACCTTGGAGGTTGAAAGTTCAGACACAATTGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGTATCCCCCCAGACCAACAGAGGTTGATCTTTGCTGGGAAGCAACTGGAGGATGGAAGGACTCTTGCTGACTACAACATTCAGAAAGAGTCTACTCTTCACCTTGTCTTGCGTCTTCGTGGTGGGTTTTGA
>Glyma13g24470.1 sequence type=predicted peptide gene model=Glyma13g24470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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