Glyma13g24340 - SoyBase

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Report for Sequence Feature Glyma13g24340

Feature Type:	gene_model
Chromosome:	Gm13
Start:	27742731
stop:	27747108
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g24340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G28440	AT	Annotation by Michelle Graham. TAIR10: HAESA-like 1 \| chr1:9996914-10000171 FORWARD LENGTH=996	SoyBase	E_val: 0	ISS
GO:0000271	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007020	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule nucleation	SoyBase	N/A	ISS
GO:0007169	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway	SoyBase	N/A	ISS
GO:0007389	GO-bp	Annotation by Michelle Graham. GO Biological Process: pattern specification process	SoyBase	N/A	ISS
GO:0008361	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell size	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009825	GO-bp	Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0009926	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin polar transport	SoyBase	N/A	ISS
GO:0009932	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell tip growth	SoyBase	N/A	ISS
GO:0010015	GO-bp	Annotation by Michelle Graham. GO Biological Process: root morphogenesis	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0010817	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels	SoyBase	N/A	ISS
GO:0040007	GO-bp	Annotation by Michelle Graham. GO Biological Process: growth	SoyBase	N/A	ISS
GO:0043481	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light	SoyBase	N/A	ISS
GO:0048653	GO-bp	Annotation by Michelle Graham. GO Biological Process: anther development	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF884	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_I1M066	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M066_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6J330	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat receptor-like protein kinase (Fragment) n=1 Tax=Pyrus pyrifolia RepID=Q6J330_PYRPY	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g24340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g24340

Paralog	Evidence	Comments
Glyma07g32230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g24340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g174900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g24340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g24340

Limit To All Plant Sequences

>Glyma13g24340.1   sequence type=CDS   gene model=Glyma13g24340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAACCCAAAAAACCAAACAACACTCTCCATCATCATCATAGTCTACATTCTCTTCTTCTCACTAGCAACGACGTTGGTGTCGTGTCTGAACCAAGAAGGCTTATACCTCTACCAGCTAAAACTCTCCTTAGACGACCCAGACTCGAAACTCTCCTCATGGAACTCACGAGACGCCACTCCCTGCAACTGGTACGGCGTAACCTGCGACGCCGCAACAAACACCACCGTAACGGAGTTGGACTTGTCCGACACCAACATCGGAGGCCCATTCCTCTCTAACATCTTGTGTCGTCTCCCAAACCTCGTTTCTGTGAACCTGTTCAACAACTCCATCAACGAAACCCTACCTTCAGAAATCTCCCTCTGTAAAAACCTCATCCACCTCGACCTCTCCCAGAATCTTCTCACGGGCCCACTCCCAAACACGCTCCCGCAACTTCTTAATCTCCGCTACCTCGACCTCACCGGCAACAACTTCTCCGGCCCCATCCCTGACTCATTCGGAACATTCCAGAACCTGGAAGTTCTCTCCCTCGTTTCGAATCTTCTAGAAGGCACAATCCCTTCCTCCTTAGGTAATGTGAGTACTCTGAAGATGCTGAACTTAAGCTACAACCCTTTTTTCCCCGGTCGGATCCCGCCGGAGATCGGAAACCTAACGAACCTCCAAGTTCTCTGGCTAACGCAATGCAACCTCGTCGGCGTCATTCCAACCTCCCTCGGGAGGTTGGGAAAGCTACAGGATTTGGACCTCGCGCTCAACGACCTCTACGGTTCCATTCCGAGTTCGCTCACCGAGTTAACCAGCCTGAGACAGATCGAGTTGTATAACAACTCGCTCTCCGGGGAGCTTCCGAAGGGAATGGGGAACCTCACTAACTTGAGGCTCATCGATGCTTCCATGAATCACTTGACCGGAAGGATTCCGGAGGAGCTCTGTTCTCTGCCGCTGGAGAGTCTTAACCTTTACGAGAATCGCTTCGAGGGCGAGTTGCCGGCGAGCATTGCTGATTCGCCGAATTTGTATGAATTGAGGCTCTTCGGTAACCGGCTTACCGGAAAGTTACCGGAGAATCTCGGGAGAAACTCGCCGCTCCGGTGGCTTGATGTTTCGAGCAACCAGTTCTGGGGGCCAATTCCGGCGACGCTGTGTGACAAGGGGGCGCTAGAGGAGCTTCTGGTGATTTACAATCTTTTCTCCGGGGAGATTCCGGCGAGCCTCGGCACGTGCCAGAGCTTGACACGTGTGAGGCTCGGTTTTAACAGACTCTCCGGCGAGGTTCCCGCGGGGATCTGGGGGCTGCCGCACGTGTACCTGCTCGAGCTTGTTGATAACTCGTTTTCCGGTTCCATTGCGAGGACCATTGCTGGTGCTGCGAACTTGTCGCTGTTGATTTTGTCCAAGAACAACTTCACGGGAACGATTCCCGATGAGGTTGGGTGGTTGGAGAATCTCGTCGAGTTTTCAGCTAGTGATAATAAATTCACTGGTTCGCTTCCTGATAGTATTGTGAATCTTGGGCAGCTTGGGATTCTTGATTTTCATAAAAATAAGCTCTCTGGGGAGCTTCCGAAAGGGATTCGTTCTTGGAAGAAGCTCAACGATTTGAATCTGGCGAACAATGAGATTGGTGGGAGGATTCCTGATGAGATTGGGGGTTTGTCCGTGCTGAATTTTCTGGACCTTTCTAGAAACCGGTTTTTGGGGAAAGTCCCTCACGGGTTGCAGAATCTGAAGCTGAATCAGCTCAATTTGTCTTATAACCGATTATCCGGTGAATTACCTCCTTTGTTGGCTAAGGATATGTATAGGTCTAGTTTTCTAGGGAATCCTGGGCTGTGTGGGGATTTGAAGGGGTTGTGTGATGGGAGGGGTGAGGAGAAGAGTGTGGGTTATGTTTGGCTGCTTCGAACGATTTTTGTTGTTGCCACTTTGGTTTTCCTTGTTGGTGTGGTTTGGTTTTACTTTAGGTACAAGAATTTCCAGGACTCGAAGAGGGCTATCGATAAGTCGAAATGGACGTTGATGTCGTTTCATAAGCTGGGTTTTAGTGAAGATGAGATTTTGAACTGTCTTGATGAGGATAATGTGATTGGAAGCGGATCGTCCGGGAAGGTCTACAAGGTTGTGCTTAGCAGTGGGGAGGTTGTGGCTGTGAAGAAGATATGGGGAGGGGTTAAGAAGGAGGTGGAGAGTGGGGATGTTGAGAAGGGTGGTAGGGTTCAGGACAATGCTTTTGATGCTGAGGTTGAAACTTTAGGTAAAATCAGGCATAAGAACATTGTTAAGCTGTGGTGTTGCTGTACCACTAGGGATTGCAAGCTCTTGGTTTATGAATATATGCCTAATGGAAGTCTTGGTGATTTGCTTCATAGCAGTAAGGGAGGGTTGTTGGATTGGCCAACAAGGTACAAGATAGCTGTGGATGCTGCAGAAGGCCTCTCTTATCTGCACCATGACTGTGTTCCCGCAATTGTTCATAGAGATGTGAAATCTAACAATATTCTGTTGGACGTGGACTTTGGTGCGAGGGTGGCTGATTTTGGAGTAGCTAAGGCGGTTGAAACCACGCCCAAAGGAGCTAAATCCATGTCCGTCATTGCTGGCTCTTGTGGCTATATTGCACCAGAATATGCATATACACTTAGAGTGAACGAGAAGAGCGACATATACAGTTTCGGGGTTGTCATACTCGAGTTGGTCACTGGAAAACGCCCCGTGGACCCTGAATTTGGGGAGAAAGACTTGGTTAAGTGGGTGTGCACAACCTTGGACCAGAAAGGCGTGGACCATTTAATTGATCCAAGGCTTGATACTTGTTTCAAAGAAGAGATTTGCAAGGTCTTCAACATTGGACTCATGTGCACTAGTCCTCTTCCTATCCACCGGCCTTCAATGAGAAGAGTGGTGAAGATGTTGCAAGAGGTGGGAACAGAGAACCAAACCAAGTCTGCAAAGAAAGATGGAAAGTTATCCCCTTATTACTATGACGATGCCTCGGATCATGGAAGTGTTGTTTAA

Predicted protein sequences of Glyma13g24340

Limit To All Plant Sequences

>Glyma13g24340.1   sequence type=predicted peptide   gene model=Glyma13g24340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTNPKNQTTLSIIIIVYILFFSLATTLVSCLNQEGLYLYQLKLSLDDPDSKLSSWNSRDATPCNWYGVTCDAATNTTVTELDLSDTNIGGPFLSNILCRLPNLVSVNLFNNSINETLPSEISLCKNLIHLDLSQNLLTGPLPNTLPQLLNLRYLDLTGNNFSGPIPDSFGTFQNLEVLSLVSNLLEGTIPSSLGNVSTLKMLNLSYNPFFPGRIPPEIGNLTNLQVLWLTQCNLVGVIPTSLGRLGKLQDLDLALNDLYGSIPSSLTELTSLRQIELYNNSLSGELPKGMGNLTNLRLIDASMNHLTGRIPEELCSLPLESLNLYENRFEGELPASIADSPNLYELRLFGNRLTGKLPENLGRNSPLRWLDVSSNQFWGPIPATLCDKGALEELLVIYNLFSGEIPASLGTCQSLTRVRLGFNRLSGEVPAGIWGLPHVYLLELVDNSFSGSIARTIAGAANLSLLILSKNNFTGTIPDEVGWLENLVEFSASDNKFTGSLPDSIVNLGQLGILDFHKNKLSGELPKGIRSWKKLNDLNLANNEIGGRIPDEIGGLSVLNFLDLSRNRFLGKVPHGLQNLKLNQLNLSYNRLSGELPPLLAKDMYRSSFLGNPGLCGDLKGLCDGRGEEKSVGYVWLLRTIFVVATLVFLVGVVWFYFRYKNFQDSKRAIDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLSSGEVVAVKKIWGGVKKEVESGDVEKGGRVQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPAIVHRDVKSNNILLDVDFGARVADFGVAKAVETTPKGAKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKRPVDPEFGEKDLVKWVCTTLDQKGVDHLIDPRLDTCFKEEICKVFNIGLMCTSPLPIHRPSMRRVVKMLQEVGTENQTKSAKKDGKLSPYYYDDASDHGSVV*

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