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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24000 | AT | Annotation by Michelle Graham. TAIR10: cellulose synthase like G2 | chr4:12462142-12465471 FORWARD LENGTH=722 | SoyBase | E_val: 4.00E-165 | ISS |
| GO:0000271 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process | SoyBase | N/A | ISS |
| GO:0030244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016759 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cellulose synthase activity | SoyBase | N/A | ISS |
| GO:0016760 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cellulose synthase (UDP-forming) activity | SoyBase | N/A | ISS |
| PTHR13301 | Panther | X-BOX TRANSCRIPTION FACTOR-RELATED | JGI | ISS | |
| PTHR13301:SF23 | Panther | JGI | ISS | ||
| PF03552 | PFAM | Cellulose synthase | JGI | ISS | |
| UniRef100_B9STK2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cellulose synthase, putative n=1 Tax=Ricinus communis RepID=B9STK2_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M058 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M058_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g24270 not represented in the dataset |
Glyma13g24270 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g32283 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g174300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g24270.2 sequence type=transcript gene model=Glyma13g24270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCAGACCAAAAGCTTTACCCTTATGGCCTTATCAATCCTTTTAAGGGCTTCTTTAACCTCTCCAATTAGAACTCAGCCGTAATAACCCAAATTTCTTTCCTCCTCTTGAGTTTCTAGCCTCTCCACATTAGTACTCGAACCTTGTCAATCATAAAAAAACTTATAAAAATAATTGTCCCACCTTTCTTTGACATTCTTATCCGTGACCGAAACTTTTTCTATTTTATCCATAATGCACTTGATCCAAATCCCTTGTCTTCTTTTCTCTATATTTCGCAAGCTTATATATCTTATGTTCTCCTTTCTTGTCTCTAGGTCCTGGTAAAACTCTTCAAATACTTTAGATCATATTTCATGCACCACCTTTCGTATCTCATTCTTAGCATTCCAATACCTTAACCAGTTTTTAGCATTATTGTGCGCTTTTAAGATTTTGAAACATTCTCTTTTATTTTTAACCTTTTCTTGAACCTTTTCATCCCACCACCAAGATTTCTTGTCTCTCAACTCAAAACCTTTTTAATTCACGTAAGACTGTTTTAGCAACTTTTCTTATCTTCTTATCCTATAATATACGATAAAAAAATAGAGATGAGCAAGTAGGAATATTATTTTTCTAGGAATTGACACAAATATGCCCTTAAAATTGACAGAAAGAAGCCTCAAATATTATATAGACAAACATAGAATAGAACTATAACAAAAGGAGAGTCAAGGGAACTAGAGTAGACAAATTAATCTTATGCAGGTGAAGAAATGGAGACCCTTCCTCTGAATACCATCTATGTCCAAAACCTGTTAGTTATCATCAATAGGTTACACATGTTACTCCACTCCACTGCACTAGCCTTCTTGTTCTATTACAGACTATGCTTTTTTTTCCAACCCTCAGAAACAAGAGAAAGCCACTTGTTATTACCATGGTTACTTGTTTTTGCTTCAGAGATCATTCTCTCCTTCATTTGGATCCTTGATCAAGCTTTTCGTTGGCGTCCCGTTTCGCGGTCCGTCTTCCCGGAACGATTGCCGGAGGATCACAAGCTTCCTGCTATTGATGTGTTCATATGCACTGCTGATGCAACTAAGGAACCAACTTTGGATGTGATGAACACAGTTTTATCAGCCATGGCACTGGATTACCCTCCTCAGAAACTTCATGTGTATGTTTCGGATGATGGAGGGTCTCCATTGATTCTTCATGGAGTGAGGGAGGCTTGGAAGTTTGCTAGGTGGTGGCTTCCATTTTGTAGAAGGCACAAAATAAAGAACAGGTGTCCCAAGGCTTACTTTTCTGCTTTGAAGGATAATGATGATGGTGATTTTGCAAGGAGTAGTGTGTACATGGAAGATAAGCAAAAGATCAAGGAAAAGTACGAGGCTTTTAAAGAGGAGATAAAGACTTTCAGAAAAGATAGAACCTTTTCCAGAGATTACCCTTCTGTCATTGAGGTGATGCAAGAAACTATCATTGATGATGTAGATGATGTCAAAATGCCTCTCCTTGTTTATGTTTCTCGCGAGAAAAAGCCTTCTCATCCCCACCATTTCAAGGCTGGAGCACTCAATGTCCTTCTTCGCGTCTCTTCCGTGATGAGTAATTCTCCATACATTCTAGTTCTAGACTGTGACATGTTCTGTAATGATCCAACTTCAGCTCGATATGCCATGTGTTTTCACCTCGATCCAAAGATATCCTCCTCCTTGGCTTTTGTTCAATTTCCTCAGAAATTTCACAACATTAGCAAGAATGACATCTATGATAGTCAACTAAGATCAATATTTACACTACAATGGCAAGGTATGGATGGGCTTATGGGACCAGTGATTTCAGGTACAGGCTTTTATATAAAAAGGGTATCACTGTTTGGAAACTTCGCAAGGAAAGGAACTGATCTGCTGCAACTTAAAGAATACTTTGGTTCATCTAACGAATTCATCAGATCACTTAATCAAAACTACACAAGTGATTTGGTATCTGGTCAGAAATATGCATTACTAGAAGAACCTCACTTTTTGGCTTCTTGTAACTATGAAATTGGCACTAAATGGGGCCAAGAGGTTGGTTTCTCGTATGTTAGTGTAGTAGAAGACTACCTCACTGGATTTATCTTGAATTGTAATGGATGGACTTCAGTTTTCTGTGAACCATCTAGGCCACAGTTTCTAGGTTCAGCTACAACAAATTTGAATGATGTACTAATCCAAGGCACTAGATGGTACAGTGGTTTGTTTGAAAATGGTATAAATAGGTTTTGCCCCCTTACATATGGGCTTTCAAAGATGCCACTTCTCCAGAGTCTATGTTTAGCATGGCTCACATATTTCCCTCTTTATTGTTTCCCTCTTTGGTGTTTTGCTACTATCCCTCAGCTCTGTCTACTAAATGGAATACCCTTGTACCCTAAGCTCTTCTAAAACATTTACTTGAAGTCTTCTTAACTGGTGGAACACTCAAAAAGTGGATAAATGAGCAGAGGATATGGATGATGAAATCAGTTACTTGCCATCTATATGGATGTTTGGATGCACTACTAAAGAAAGTTGGCATAAGAGAAGCTAGTTTCTTGCCAACTAATAAATTAGGGAATGATGAACAGACTGTGCTATATCAAATGGATAAATATGACTTCCAAGCATCAAATATCTTTGTAGTGCCAATGCTTGCCCTCATCACTATCAACATATCTTGCTTCTTTGGAGGAGTCTACAGAGTGTTATTGGTGGGTGATTGTGACAAAATGTTTGTGCAGCTTTTCCTAGCAGTTTTTATAATTACGGTCAACTACCCCATCATTGAAGGGCTGATGATAAGGAAGGACAAGGGACGAATTTCTAAGTTAGTTGCTATACCTGTTATCTTGGCTACTGTTGTTCTTTTGGCATTTTTTAAACTACTAGGAATGCATAGTATGCTCTACTAGTAATTTGAGTTTAATTTTTGTGCACTGATGGGAGACTTTTATATGGTCAACCAATCAGAAGTTATGACAGATATGACTTTTAACTAATTTTCGTAAAAGTCAATAAACTTATCATACATAGCAATTTGGATGATAGTATAAAAACTCTCTACATTGTCAGAGCATAGACGATTTTCTCTCCTAATTTTACTCTTCACATTCTATCCTCAGCACAATTACAAATGTGCAAGAGAATAAAAAGTATGTGCTACAAAGACAAATAGC
>Glyma13g24270.1 sequence type=CDS gene model=Glyma13g24270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGACCCTTCCTCTGAATACCATCTATGTCCAAAACCTGTTAGTTATCATCAATAGGTTACACATGTTACTCCACTCCACTGCACTAGCCTTCTTGTTCTATTACAGACTATGCTTTTTTTTCCAACCCTCAGAAACAAGAGAAAGCCACTTGTTATTACCATGGTTACTTGTTTTTGCTTCAGAGATCATTCTCTCCTTCATTTGGATCCTTGATCAAGCTTTTCGTTGGCGTCCCGTTTCGCGGTCCGTCTTCCCGGAACGATTGCCGGAGGATCACAAGCTTCCTGCTATTGATGTGTTCATATGCACTGCTGATGCAACTAAGGAACCAACTTTGGATGTGATGAACACAGTTTTATCAGCCATGGCACTGGATTACCCTCCTCAGAAACTTCATGTGTATGTTTCGGATGATGGAGGGTCTCCATTGATTCTTCATGGAGTGAGGGAGGCTTGGAAGTTTGCTAGGTGGTGGCTTCCATTTTGTAGAAGGCACAAAATAAAGAACAGGTGTCCCAAGGCTTACTTTTCTGCTTTGAAGGATAATGATGATGGTGATTTTGCAAGGAGTAGTGTGTACATGGAAGATAAGCAAAAGATCAAGGAAAAGTACGAGGCTTTTAAAGAGGAGATAAAGACTTTCAGAAAAGATAGAACCTTTTCCAGAGATTACCCTTCTGTCATTGAGGTGATGCAAGAAACTATCATTGATGATGTAGATGATGTCAAAATGCCTCTCCTTGTTTATGTTTCTCGCGAGAAAAAGCCTTCTCATCCCCACCATTTCAAGGCTGGAGCACTCAATGTCCTTCTTCGCGTCTCTTCCGTGATGAGTAATTCTCCATACATTCTAGTTCTAGACTGTGACATGTTCTGTAATGATCCAACTTCAGCTCGATATGCCATGTGTTTTCACCTCGATCCAAAGATATCCTCCTCCTTGGCTTTTGTTCAATTTCCTCAGAAATTTCACAACATTAGCAAGAATGACATCTATGATAGTCAACTAAGATCAATATTTACACTACAATGGCAAGGTATGGATGGGCTTATGGGACCAGTGATTTCAGGTACAGGCTTTTATATAAAAAGGGTATCACTGTTTGGAAACTTCGCAAGGAAAGGAACTGATCTGCTGCAACTTAAAGAATACTTTGGTTCATCTAACGAATTCATCAGATCACTTAATCAAAACTACACAAGTGATTTGGTATCTGGTCAGAAATATGCATTACTAGAAGAACCTCACTTTTTGGCTTCTTGTAACTATGAAATTGGCACTAAATGGGGCCAAGAGGTTGGTTTCTCGTATGTTAGTGTAGTAGAAGACTACCTCACTGGATTTATCTTGAATTGTAATGGATGGACTTCAGTTTTCTGTGAACCATCTAGGCCACAGTTTCTAGGTTCAGCTACAACAAATTTGAATGATGTACTAATCCAAGGCACTAGATGGTACAGTGGTTTGTTTGAAAATGGTATAAATAGGTTTTGCCCCCTTACATATGGGCTTTCAAAGATGCCACTTCTCCAGAGTCTATGTTTAGCATGGCTCACATATTTCCCTCTTTATTGTTTCCCTCTTTGGTGTTTTGCTACTATCCCTCAGCTCTGTCTACTAAATGGAATACCCTTGTACCCTAAGGTTTCAGACCCATTTTTCATTATCTTTTCATTCATCTTTCTATCAGCTCTTCTAAAACATTTACTTGAAGTCTTCTTAACTGGTGGAACACTCAAAAAGTGGATAAATGAGCAGAGGATATGGATGATGAAATCAGTTACTTGCCATCTATATGGATGTTTGGATGCACTACTAAAGAAAGTTGGCATAAGAGAAGCTAGTTTCTTGCCAACTAATAAATTAGGGAATGATGAACAGACTGTGCTATATCAAATGGATAAATATGACTTCCAAGCATCAAATATCTTTGTAGTGCCAATGCTTGCCCTCATCACTATCAACATATCTTGCTTCTTTGGAGGAGTCTACAGAGTGTTATTGGTGGGTGATTGTGACAAAATGTTTGTGCAGCTTTTCCTAGCAGTTTTTATAATTACGGTCAACTACCCCATCATTGAAGGGCTGATGATAAGGAAGGACAAGGGACGAATTTCTAAGTTAGTTGCTATACCTGTTATCTTGGCTACTGTTGTTCTTTTGGCATTTTTTAAACTACTAGGAATGCATAGTATGCTCTACTAG >Glyma13g24270.2 sequence type=CDS gene model=Glyma13g24270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGACCCTTCCTCTGAATACCATCTATGTCCAAAACCTGTTAGTTATCATCAATAGGTTACACATGTTACTCCACTCCACTGCACTAGCCTTCTTGTTCTATTACAGACTATGCTTTTTTTTCCAACCCTCAGAAACAAGAGAAAGCCACTTGTTATTACCATGGTTACTTGTTTTTGCTTCAGAGATCATTCTCTCCTTCATTTGGATCCTTGATCAAGCTTTTCGTTGGCGTCCCGTTTCGCGGTCCGTCTTCCCGGAACGATTGCCGGAGGATCACAAGCTTCCTGCTATTGATGTGTTCATATGCACTGCTGATGCAACTAAGGAACCAACTTTGGATGTGATGAACACAGTTTTATCAGCCATGGCACTGGATTACCCTCCTCAGAAACTTCATGTGTATGTTTCGGATGATGGAGGGTCTCCATTGATTCTTCATGGAGTGAGGGAGGCTTGGAAGTTTGCTAGGTGGTGGCTTCCATTTTGTAGAAGGCACAAAATAAAGAACAGGTGTCCCAAGGCTTACTTTTCTGCTTTGAAGGATAATGATGATGGTGATTTTGCAAGGAGTAGTGTGTACATGGAAGATAAGCAAAAGATCAAGGAAAAGTACGAGGCTTTTAAAGAGGAGATAAAGACTTTCAGAAAAGATAGAACCTTTTCCAGAGATTACCCTTCTGTCATTGAGGTGATGCAAGAAACTATCATTGATGATGTAGATGATGTCAAAATGCCTCTCCTTGTTTATGTTTCTCGCGAGAAAAAGCCTTCTCATCCCCACCATTTCAAGGCTGGAGCACTCAATGTCCTTCTTCGCGTCTCTTCCGTGATGAGTAATTCTCCATACATTCTAGTTCTAGACTGTGACATGTTCTGTAATGATCCAACTTCAGCTCGATATGCCATGTGTTTTCACCTCGATCCAAAGATATCCTCCTCCTTGGCTTTTGTTCAATTTCCTCAGAAATTTCACAACATTAGCAAGAATGACATCTATGATAGTCAACTAAGATCAATATTTACACTACAATGGCAAGGTATGGATGGGCTTATGGGACCAGTGATTTCAGGTACAGGCTTTTATATAAAAAGGGTATCACTGTTTGGAAACTTCGCAAGGAAAGGAACTGATCTGCTGCAACTTAAAGAATACTTTGGTTCATCTAACGAATTCATCAGATCACTTAATCAAAACTACACAAGTGATTTGGTATCTGGTCAGAAATATGCATTACTAGAAGAACCTCACTTTTTGGCTTCTTGTAACTATGAAATTGGCACTAAATGGGGCCAAGAGGTTGGTTTCTCGTATGTTAGTGTAGTAGAAGACTACCTCACTGGATTTATCTTGAATTGTAATGGATGGACTTCAGTTTTCTGTGAACCATCTAGGCCACAGTTTCTAGGTTCAGCTACAACAAATTTGAATGATGTACTAATCCAAGGCACTAGATGGTACAGTGGTTTGTTTGAAAATGGTATAAATAGGTTTTGCCCCCTTACATATGGGCTTTCAAAGATGCCACTTCTCCAGAGTCTATGTTTAGCATGGCTCACATATTTCCCTCTTTATTGTTTCCCTCTTTGGTGTTTTGCTACTATCCCTCAGCTCTGTCTACTAAATGGAATACCCTTGTACCCTAAGCTCTTCTAA
>Glyma13g24270.1 sequence type=predicted peptide gene model=Glyma13g24270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high METLPLNTIYVQNLLVIINRLHMLLHSTALAFLFYYRLCFFFQPSETRESHLLLPWLLVFASEIILSFIWILDQAFRWRPVSRSVFPERLPEDHKLPAIDVFICTADATKEPTLDVMNTVLSAMALDYPPQKLHVYVSDDGGSPLILHGVREAWKFARWWLPFCRRHKIKNRCPKAYFSALKDNDDGDFARSSVYMEDKQKIKEKYEAFKEEIKTFRKDRTFSRDYPSVIEVMQETIIDDVDDVKMPLLVYVSREKKPSHPHHFKAGALNVLLRVSSVMSNSPYILVLDCDMFCNDPTSARYAMCFHLDPKISSSLAFVQFPQKFHNISKNDIYDSQLRSIFTLQWQGMDGLMGPVISGTGFYIKRVSLFGNFARKGTDLLQLKEYFGSSNEFIRSLNQNYTSDLVSGQKYALLEEPHFLASCNYEIGTKWGQEVGFSYVSVVEDYLTGFILNCNGWTSVFCEPSRPQFLGSATTNLNDVLIQGTRWYSGLFENGINRFCPLTYGLSKMPLLQSLCLAWLTYFPLYCFPLWCFATIPQLCLLNGIPLYPKVSDPFFIIFSFIFLSALLKHLLEVFLTGGTLKKWINEQRIWMMKSVTCHLYGCLDALLKKVGIREASFLPTNKLGNDEQTVLYQMDKYDFQASNIFVVPMLALITINISCFFGGVYRVLLVGDCDKMFVQLFLAVFIITVNYPIIEGLMIRKDKGRISKLVAIPVILATVVLLAFFKLLGMHSMLY* >Glyma13g24270.2 sequence type=predicted peptide gene model=Glyma13g24270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high METLPLNTIYVQNLLVIINRLHMLLHSTALAFLFYYRLCFFFQPSETRESHLLLPWLLVFASEIILSFIWILDQAFRWRPVSRSVFPERLPEDHKLPAIDVFICTADATKEPTLDVMNTVLSAMALDYPPQKLHVYVSDDGGSPLILHGVREAWKFARWWLPFCRRHKIKNRCPKAYFSALKDNDDGDFARSSVYMEDKQKIKEKYEAFKEEIKTFRKDRTFSRDYPSVIEVMQETIIDDVDDVKMPLLVYVSREKKPSHPHHFKAGALNVLLRVSSVMSNSPYILVLDCDMFCNDPTSARYAMCFHLDPKISSSLAFVQFPQKFHNISKNDIYDSQLRSIFTLQWQGMDGLMGPVISGTGFYIKRVSLFGNFARKGTDLLQLKEYFGSSNEFIRSLNQNYTSDLVSGQKYALLEEPHFLASCNYEIGTKWGQEVGFSYVSVVEDYLTGFILNCNGWTSVFCEPSRPQFLGSATTNLNDVLIQGTRWYSGLFENGINRFCPLTYGLSKMPLLQSLCLAWLTYFPLYCFPLWCFATIPQLCLLNGIPLYPKLF*
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