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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G46070 | AT | Annotation by Michelle Graham. TAIR10: Guanylate-binding family protein | chr5:18683468-18688397 FORWARD LENGTH=1082 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006955 | GO-bp | Annotation by Michelle Graham. GO Biological Process: immune response | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG0963 | KOG | Transcription factor/CCAAT displacement protein CDP1 | JGI | ISS | |
| PTHR10751 | Panther | GUANYLATE-BINDING PROTEIN | JGI | ISS | |
| PF02263 | PFAM | Guanylate-binding protein, N-terminal domain | JGI | ISS | |
| PF02841 | PFAM | Guanylate-binding protein, C-terminal domain | JGI | ISS | |
| UniRef100_B9RB86 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Interferon-induced guanylate-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RB86_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M057 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M057_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g24260 not represented in the dataset |
Glyma13g24260 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g32290 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g174200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g24260.1 sequence type=CDS gene model=Glyma13g24260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCAAGTATTTCAACCGAGGCAGGGACAGCCCCGCCGCCGACGCGTCACCGCCTTCCCCCGCGGCGGCGACGCCGTCGTACTCGTCATCGTCGGCGTCTCCGGTGACTGGCCCCGCGAGGCCCATTCGCCTGGTATACTGCGACGAGAAGGGAAAGTTCCGGATGGATCCGGAAGCCGTCGCGACGCTCCAACTCGTCAAGGAGCCCATCGGCGTCGTCTCCGTCTGCGGCCGCGCGCGCCAGGGCAAGAGTTTTATCCTCAACCAGCTCTTAGGAAAGAGTAGTGGATTTCAAGTAGCATCAACACATCGGCCTTGTACCAAAGGGCTTTGGTTGTGGAGTGCACCTTTGAAGAAGACTGCTCTTGATGGAACAGAGTACAGTCTCCTGCTATTAGACAGTGAAGGAATAGATGCTTATGATCAAACGGGCACATACAGCACCCAGATATTCTCACTGGCAGTTCTTTTGTCTAGCATGTTCATTTATAACCAGATGGGTGGTATCGATGAGGCTTCCCTTGATCGTCTTTCTCTTGTCACCCAAATGACAAAGCACATTCGTGTTAGAGCATCTGGAGGAAAGACTTCTGCGTCTGAACTAGGACAGTTTTCCCCAATTTTTGTTTGGCTGTTAAGGGACTTTTATTTAGACCTAACAGAAGATAACAGAAAAATAACACCCCGTGATTATCTGGAAATTGCCTTGAGGCCAGTCCAAGGGAGTGGAAAAGATATAAAGGCTAAAAATGAGATTCGAGATTCCATTCGGGCTTTATTCCCAGACAGGGAATGTTTCACTCTTGTGAGACCTTTGAACAACGAAAATGATCTACAGCGACTGGACCAGATATCAATGGATAAATTAAGAACTGGATTTCGAGAGGGCCTTGATTCTTTGACAAAGTTTGTTTTCGAGAGAACAAGGCCAAAACAAGTTGGTGCAACTATGATGACTGGACCTGTATTGGTCGGTATAACTGAATCTTATCTGAAAGCACTCAACGAAGGTGCCGTGCCTACAATTTCTTCCTCATGGCAGAGTGTCGAAGAAGCTGAGTGTCACCGGGCATATGATTCTGCTACTGATGTTTATATGTCTTCTTTTGACCGCTCAACGCCACCTGAGGAAGTTGCTTTGAGGGAAGCACATGAACAAGCAAAACAAAAGTCAATGGCTGCTTTTAATGCTATTGCCATAGGAGTTGGTTCAGCCAGGAAGACATATGAGGGGCTCCTTCTTAAATTCTTCAAAAAGGCATTTGAGGATTATAGGAAAGATGCATTCATGGAAGCAGATCTGCAGTGCTCAAATGCTATACAGTCTATGGAAAAAAGGCTGAGGGCAGCTTGTAATGCTTCTGATGCAAAGATTGATAATGTTGCTAAGGTTCTTGATGCTCTTTTATCTGAATATGAAAAAACTATTCAAGGTCCAGGGAAATGGCAAAGACTTGCTGTTTTCTTACAACAAAGTTTTGAAGGCCCTGTGCTTGACCTTGTCAAGAGGCTAATAGCTACCATCGAATCAGAGAAGAGGTCTCATGCTTTACAATATCGGTCTATTGAAGAAAAAGTGGACCTTCTGACAAAACGGCTGGAAGCCACTGAAGGTGAAAAATCCAACTACATTAAGCGATATGAGGATGCCATCAATGATAAGAAGAAACTCATGGATGAATATAAGAATCGCATAACTGACCTGCAAGCTAATCGTCGCTCACTGGATGAGAGGTACTCTAGTTTATTGAAAACACTAGACTCTACCAAGCAGGATTCCATGGATTGGAAAAGAAAATATGAGCAAGTCTTATCGAGGCAGAAAGCTGAAGAAGATCAAGCTAGTTCTGAAATAGCAGCCCTCAAGTCCCGGAGTGGTGCTGCTGAAGCAAGGTTGGCAGCAGCAAAGGAACAAGCTCAGTCTGCTCAAGAGGAGGCAGAGGAGTGGAAGCGGAAGTATGATATCGCCCGTAGAGAAGCACAATCTGCTTTACAGAAAGCAGCTAATGTGCAGGAGCGCACAAACAAGCAGACACAATTGAGGGAAGATGCTTTAAGAGAAGAATTTTCTGGAACTTTGGCTGAAAAAGAAGATGAAATAAAAGAGAAAACTGCAAAAATTGAGCATGCTGAGAAGTGTTTAACAACCCTGAATTTAGAGTTGAAGGCTGCTGAATCAAAGATAAGGAGTTATGATACAGAAATATCCTCACTGAGGATTGAAATTAAAGAGTTGACTGAGAAGTTGAAAGCTGAAAATGCTAAGGCTCAATCATACGAAAGGGAAGCAATAGTATTTCAGCAGGAGAAGAACCATCTAGAACAGAAGTATCATACCGAGTTCAAAAGATTTGATGAGGTCCAGGAAAGGTGTAAAACTGCTGAAAAAGAAGCTGCAAGGGCTACTGAAGTGGCTGATAAAGCGCGGGCTGAAGCAGGCATGGCCCAGAAGGAGAGGAGTGAGATGCAGAGACTGGCAATGGAAAGACTGGCACAGATTGAGAGGGCTGAGAGGAGAATTGAAAATTTGGGGAGGGAGAAAGATAATCTGGAAGCTGAATTACGGAGAGTAAGGGATTCAGAGAAGGATGCACTTACCAGAGCTGTGAAACTAGAGGAGAAGGTGCAACAGAGAGAGAAGGATTTAGAAGCCCTTTTGGATAAAGATAAGACACACCGGCGAAATAGTGCCCAGATTCTCGAACAGCTTCTGGAAACAGAACGCGAAGCACATGCACAGGCGAATAACCGGGCGGAGGCTCTCTCTCTACAGTTACAATCTGCACAAGCCAAAATTGATTCTCTCCATCAAGAGCTGACTAAATTTCGACTGAATGAAACTGCATTGGACAGTAAACTAAACACTGCTTCCCATGGTAAACGTATGAGGGTAGATGACAACATTGGTGATGACATGGATGTAAGTCCCAGAATTGTAAAGGGAACCAAGAGAACAAGGAGTACATACTCACAACCAGAAGATGGTGGTTCCATCTTTGAGGGTGCTGAAGAAAATCTTAGTCAGCGAACAAGTGAGGAGGATTATAGAAAGTTTACCGTACAAAGGCTTAAGCAAGAGCTGACAAAGCTCAACTATGGTGATCAGCTGCTTCGGTTGAAGAATCCCAACAAGAAAGAGATCATTGCTCTGTATGAGAAATGTGTTCTTCAGAAGTCATAG
>Glyma13g24260.1 sequence type=predicted peptide gene model=Glyma13g24260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLKYFNRGRDSPAADASPPSPAAATPSYSSSSASPVTGPARPIRLVYCDEKGKFRMDPEAVATLQLVKEPIGVVSVCGRARQGKSFILNQLLGKSSGFQVASTHRPCTKGLWLWSAPLKKTALDGTEYSLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDEASLDRLSLVTQMTKHIRVRASGGKTSASELGQFSPIFVWLLRDFYLDLTEDNRKITPRDYLEIALRPVQGSGKDIKAKNEIRDSIRALFPDRECFTLVRPLNNENDLQRLDQISMDKLRTGFREGLDSLTKFVFERTRPKQVGATMMTGPVLVGITESYLKALNEGAVPTISSSWQSVEEAECHRAYDSATDVYMSSFDRSTPPEEVALREAHEQAKQKSMAAFNAIAIGVGSARKTYEGLLLKFFKKAFEDYRKDAFMEADLQCSNAIQSMEKRLRAACNASDAKIDNVAKVLDALLSEYEKTIQGPGKWQRLAVFLQQSFEGPVLDLVKRLIATIESEKRSHALQYRSIEEKVDLLTKRLEATEGEKSNYIKRYEDAINDKKKLMDEYKNRITDLQANRRSLDERYSSLLKTLDSTKQDSMDWKRKYEQVLSRQKAEEDQASSEIAALKSRSGAAEARLAAAKEQAQSAQEEAEEWKRKYDIARREAQSALQKAANVQERTNKQTQLREDALREEFSGTLAEKEDEIKEKTAKIEHAEKCLTTLNLELKAAESKIRSYDTEISSLRIEIKELTEKLKAENAKAQSYEREAIVFQQEKNHLEQKYHTEFKRFDEVQERCKTAEKEAARATEVADKARAEAGMAQKERSEMQRLAMERLAQIERAERRIENLGREKDNLEAELRRVRDSEKDALTRAVKLEEKVQQREKDLEALLDKDKTHRRNSAQILEQLLETEREAHAQANNRAEALSLQLQSAQAKIDSLHQELTKFRLNETALDSKLNTASHGKRMRVDDNIGDDMDVSPRIVKGTKRTRSTYSQPEDGGSIFEGAEENLSQRTSEEDYRKFTVQRLKQELTKLNYGDQLLRLKNPNKKEIIALYEKCVLQKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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