Glyma13g24210 - SoyBase

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Report for Sequence Feature Glyma13g24210

Feature Type:	gene_model
Chromosome:	Gm13
Start:	27576122
stop:	27577921
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g24210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35150	AT	Annotation by Michelle Graham. TAIR10: O-methyltransferase family protein \| chr4:16726948-16728531 REVERSE LENGTH=325	SoyBase	E_val: 2.00E-52	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: O-methyltransferase activity	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
KOG3178	KOG	Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases	JGI		ISS
PTHR11746	Panther	O-METHYLTRANSFERASE	JGI		ISS
PF00891	PFAM	O-methyltransferase	JGI		ISS
PF08100	PFAM	Dimerisation domain	JGI		ISS
UniRef100_Q84KK4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isoflavone 4'-O-methyltransferase n=2 Tax=Lotus japonicus RepID=I4OMT_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_UPI000189DA0A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189DA0A related cluster n=1 Tax=unknown RepID=UPI000189DA0A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g24210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g24210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g173600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g24210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g24210

Limit To All Plant Sequences

>Glyma13g24210.1   sequence type=CDS   gene model=Glyma13g24210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTTCTGTGGCAACAGCACTGAAGAGAGTGAACTGCATCATGCTCAAATTCATTTGTACAAACACGTATACAACTTTGTGAGTTCCATGGCTCTTAAGTCTGCTATGGAATTAGGCATAGCAGACGTAATCCATAGCCACGGAAAACCCATGACTATTTCCGAGTTATCCTCAGCTCTCAAATTGCACCCTTCAAAAGTGAGTGTCCTCCAACGCTTTCTCCGCCTTTTAACGCACAATGGGTTCTTTGCAAAAACAATATTGCCGTCAAAGAACGGTGTAGAAGGAGGAGAAGAAATAGCGTATGCTCTTACTCCTCCTTCGAAGCTTCTAATAAGAAACAAGTCAATATGTTTGGCGCCTATTGTGAAGGGAGCTCTTCATTCGAGCTCCCTTGACATGTGGCATTCCTCCAAGAAATGGTTCAGTGAGGATAAGGAACTGACACTGTATGAGAGTGCAACTGGGGAGAGTTTCTGGGACTTTCTCAACAAAACCACTGAATCTGACACGCTGGGTATGTTTCAAGATGCCATGGCTGCAGATTCTAAGGTGTTCAAACTTGCACTCGAGGAATGCAAGCATGTGTTCGAGGGATTGGGTTCCCTCGTCGATGTGGGTGGTGGAACTGGTGTTGTCACAAGACTCATCAGTGAAACCTTCCCTCACTTGAAATGCACTGTGTTTGACCAACCACAGGTTGTGGCTAATTTAACTGGAAACGAAAATTTGAACTTTGTTGGTGGAGATATGTTCAAGTCCATCCCCTCTGCCGATGCAGTTTTACTCAAGTGGGTTCTGCATGATTGGAACGATGAACTCTCTGTGAAGATATTGAAGAACTGCAAAGAAGCTATTTCAGGGAAAGGGAAAGAAGGAAAGGTTATAATTATAGACATAGCAATTGATGAAGTAGGTGATGATCGCGAAATGACTGAATTGAAGCTAGACTATGATTTAGTGATGTTGACTATGTTTAATGGAAAAGAAAGAGAAAAGAAAGAGTGGGAGAAACTAATTTACGAGGCAGGATTCAGCAACTACAAAATTATTCCCATATGTGGATTCAAATCTCTCATTGAAGTTTATCCTTAA

Predicted protein sequences of Glyma13g24210

Limit To All Plant Sequences

>Glyma13g24210.1   sequence type=predicted peptide   gene model=Glyma13g24210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFCGNSTEESELHHAQIHLYKHVYNFVSSMALKSAMELGIADVIHSHGKPMTISELSSALKLHPSKVSVLQRFLRLLTHNGFFAKTILPSKNGVEGGEEIAYALTPPSKLLIRNKSICLAPIVKGALHSSSLDMWHSSKKWFSEDKELTLYESATGESFWDFLNKTTESDTLGMFQDAMAADSKVFKLALEECKHVFEGLGSLVDVGGGTGVVTRLISETFPHLKCTVFDQPQVVANLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDELSVKILKNCKEAISGKGKEGKVIIIDIAIDEVGDDREMTELKLDYDLVMLTMFNGKEREKKEWEKLIYEAGFSNYKIIPICGFKSLIEVYP*

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