SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G34040 | AT | Annotation by Michelle Graham. TAIR10: Apoptosis inhibitory protein 5 (API5) | chr2:14377957-14382246 REVERSE LENGTH=553 | SoyBase | E_val: 0 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| KOG2213 | KOG | Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins | JGI | ISS | |
| PTHR12758 | Panther | APOPTOSIS INHIBITOR 5-RELATED | JGI | ISS | |
| PTHR12758:SF11 | Panther | APOPTOSIS INHIBITOR 5 | JGI | ISS | |
| PF05918 | PFAM | Apoptosis inhibitory protein 5 (API5) | JGI | ISS | |
| UniRef100_B9S956 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Apoptosis inhibitor, putative n=1 Tax=Ricinus communis RepID=B9S956_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M042 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M042_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g24090 not represented in the dataset |
Glyma13g24090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g32480 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g172200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g24090.2 sequence type=transcript gene model=Glyma13g24090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGCGTTGATTTTGTTCTTCAATTTCCAAATCGACGTTACAATCGCAATCGCAAATTGCAGAAACGCGCGTTCGTTCCAATAATGTCTGACCCCGCTGCCGAAGAGGCTGCTTTCATCGAGAAGCTCTACGAATACGGCGAGCAGCTCAACAATGCCAAGGACAAGTCGCAGAATGTGCAGGATTACCAGGGAATCATAGATGCGGCGAAGACGAGTGTGAAGGCGAAGCAGCTCGCCGCGCAGCTGATTCCCAAGTTCTTCAAGTTCTTCCCTGACCTCTCGAGCCCTGCTCTCGACACGCATCTTGATTTGGTTGAGGCTGAAGAACTTGGGGTTCGGGTGCAAGCAATTAGAGGTCTGCCTCTTTTCTGTAAGGATACACCTGAGAATATTGGGAAGATGGTTGATATTCTTGTGCAAATTCTTGGGTCTGAGGAATTTGTGGAGCGTGATGCAGTACATAAGGCTCTTATGTCTTTGCTGAGGCAGGATGTAAAAGCTTCTTTGACGGCTTTGTTTAAGCACATTGGCAGTGTTGAAGAGCCAAGCACGGATGATGTCATTCGTGAGAAAGTTATAAACTTTGTTAGAGATAAGGTTTTCCCTATCAAAGCTGAATTGTTGAAACCCCAGGAGGAAATGGAAAGACACATAACTGATCTCATTAAAAAGAGTTTAGAAGATGTAACTGGCATAGAATTTCGAATGTTTATGGATTTCCTGAAGAGTTTGAGCCTATTTGGAGAAAAGGCTCCGGCTGAGCGGATGAAAGAGCTTATTGGAATCATTGAAGGGCAAGCTGATTTAGATGCACAGTTCAATGTATCAGATGCAGATCATATTGACAGGTTGATATCATGCCTTCATATGGCACTTCCATTTGTAGTGAGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATACCTGTTTTTGACCAGCTTCCTGGAGAACGGAAAGTAGATTTACTCAGAAGCCTTGCAGAATTTTCACCTTATACAACACCACAAGATTCACGCCAAATGCTTCCTTCTATTGTTCAGTTGCTTAAGAAATACATGACTTGGAAGAAGACTGGAGAAGAGATGAACTTTACCTATGTTGAGTGCTTGTTGTACACATTTCATCACTTAGCTCATAAGGTTCCTAATGCGACAAATAGTTTATGTGGATACAAAATTGTTACTGGCCAGCCATCTGATAGGCTTGGAGAGGACTTTTCAGAGCATTATAATGATTTTACTGAGAGATTGAATAATGTTGAGGAGTTCACCCGGGCTACAATCAAGAAATTAACTCAAGGAATGGATGAAAACAACAAATCTATGGCCGGTGCTAAAACTGATGAAGAAAAGGAAAAAATTAAAACTAAAAAGCAGAATGCTACAACTGGGTTGCGGACTTGTAATAACATTTTGACAATGACAAAGCCATTGCACGCCAAAGTGCCTTCTTTTATTGGAGATAAGAGAATCAATCTTTCTTGGAAAGAAGCAACAAAAGCAGCATCTACTGCACCGGCTGCTGGAGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGTCTCAAAGAAAGGTCGAGGTGCTGGTGGTTTGCAAAATCAACTTGTCAATAGAGCGCTGGAAGGATTGTCTGGTGGTGGGAGAGGGGGTATGAGGGGCAGAGGCCGGGGCTGGGGTGGTCGTGGAAGAGGAAGAGGAGGGTATCATCGGTAACTTTGTTGCAGATGTGATGTAGAAAACGTCAGACTTCACCAGGCTGTACTAGAATACGAATAGGACCTGTTAATGTACTAAAATTCTTTGTCGAGGAAGTTTTGACTTTTGATTATAGAGGATGATGAAATTTTAATTTAGTCGTGTACTTTTTACAAAGGTTGTTCATTTAGAATGCCGAGTTATTGATCATTTTCCAATCCATTTGTTGCAAGCAGCAGATGGGACTAGCTGACGGAACTTATGTTCGTTCGTATGTATGCATGTAATTTTAATGACGAGTGCATTTTAATGAAGACCGTATCTCCTAGTATGGATGTTACCCGTTTCAAGCAACATGAAATTAAATGGTCAGGTTCTTCGTACATTTGCCCTTAACG
>Glyma13g24090.1 sequence type=CDS gene model=Glyma13g24090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGACCCCGCTGCCGAAGAGGCTGCTTTCATCGAGAAGCTCTACGAATACGGCGAGCAGCTCAACAATGCCAAGGACAAGTCGCAGAATGTGCAGGATTACCAGGGAATCATAGATGCGGCGAAGACGAGTGTGAAGGCGAAGCAGCTCGCCGCGCAGCTGATTCCCAAGTTCTTCAAGTTCTTCCCTGACCTCTCGAGCCCTGCTCTCGACACGCATCTTGATTTGGTTGAGGCTGAAGAACTTGGGGTTCGGGTGCAAGCAATTAGAGGTCTGCCTCTTTTCTGTAAGGATACACCTGAGAATATTGGGAAGATGGTTGATATTCTTGTGCAAATTCTTGGGTCTGAGGAATTTGTGGAGCGTGATGCAGTACATAAGGCTCTTATGTCTTTGCTGAGGCAGGATGTAAAAGCTTCTTTGACGGCTTTGTTTAAGCACATTGGCAGTGTTGAAGAGCCAAGCACGGATGATGTCATTCGTGAGAAAGTTATAAACTTTGTTAGAGATAAGGTTTTCCCTATCAAAGCTGAATTGTTGAAACCCCAGGAGGAAATGGAAAGACACATAACTGATCTCATTAAAAAGAGTTTAGAAGATGTAACTGGCATAGAATTTCGAATGTTTATGGATTTCCTGAAGAGTTTGAGCCTATTTGGAGAAAAGGCTCCGGCTGAGCGGATGAAAGAGCTTATTGGAATCATTGAAGGGCAAGCTGATTTAGATGCACAGTTCAATGTATCAGATGCAGATCATATTGACAGGTTGATATCATGCCTTCATATGGCACTTCCATTTGTAGTGAGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATACCTGTTTTTGACCAGCTTCCTGGAGAACGGAAAGTAGATTTACTCAGAAGCCTTGCAGAATTTTCACCTTATACAACACCACAAGATTCACGCCAAATGCTTCCTTCTATTGTTCAGTTGCTTAAGAAATACATGACTTGGAAGAAGACTGGAGAAGAGATGAACTTTACCTATGTTGAGTGCTTGTTGTACACATTTCATCACTTAGCTCATAAGGTTCCTAATGCGACAAATAGTTTATGTGGATACAAAATTGTTACTGGCCAGCCATCTGATAGGCTTGGAGAGGACTTTTCAGAGCATTATAATGATTTTACTGAGAGATTGAATAATGTTGAGGAGTTCACCCGGGCTACAATCAAGAAATTAACTCAAGGAATGGATGAAAACAACAAATCTATGGCCGGTGCTAAAACTGATGAAGAAAAGGAAAAAATTAAAACTAAAAAGCAGAATGCTACAACTGGGTTGCGGACTTGTAATAACATTTTGACAATGACAAAGCCATTGCACGCCAAAGTGCCTTCTTTTATTGGAGATAAGAGAATCAATCTTTCTTGGAAAGAAGCAACAAAAGCAGCATCTACTGCACCGGCTGCTGGAGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGTCTCAAAGAAAGGTCGAGGTGCTGGTGGTTTGCAAAATCAACTTGTCAATAGAGCGCTGGAAGGATTGTCTGGTGGTGGGAGAGGGGGTATGAGGGGCAGAGGCCGGGGCTGGGGTGGTCGTGGAAGAGGAAGAGGAGGGTATCATCGGTAA >Glyma13g24090.2 sequence type=CDS gene model=Glyma13g24090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGACCCCGCTGCCGAAGAGGCTGCTTTCATCGAGAAGCTCTACGAATACGGCGAGCAGCTCAACAATGCCAAGGACAAGTCGCAGAATGTGCAGGATTACCAGGGAATCATAGATGCGGCGAAGACGAGTGTGAAGGCGAAGCAGCTCGCCGCGCAGCTGATTCCCAAGTTCTTCAAGTTCTTCCCTGACCTCTCGAGCCCTGCTCTCGACACGCATCTTGATTTGGTTGAGGCTGAAGAACTTGGGGTTCGGGTGCAAGCAATTAGAGGTCTGCCTCTTTTCTGTAAGGATACACCTGAGAATATTGGGAAGATGGTTGATATTCTTGTGCAAATTCTTGGGTCTGAGGAATTTGTGGAGCGTGATGCAGTACATAAGGCTCTTATGTCTTTGCTGAGGCAGGATGTAAAAGCTTCTTTGACGGCTTTGTTTAAGCACATTGGCAGTGTTGAAGAGCCAAGCACGGATGATGTCATTCGTGAGAAAGTTATAAACTTTGTTAGAGATAAGGTTTTCCCTATCAAAGCTGAATTGTTGAAACCCCAGGAGGAAATGGAAAGACACATAACTGATCTCATTAAAAAGAGTTTAGAAGATGTAACTGGCATAGAATTTCGAATGTTTATGGATTTCCTGAAGAGTTTGAGCCTATTTGGAGAAAAGGCTCCGGCTGAGCGGATGAAAGAGCTTATTGGAATCATTGAAGGGCAAGCTGATTTAGATGCACAGTTCAATGTATCAGATGCAGATCATATTGACAGGTTGATATCATGCCTTCATATGGCACTTCCATTTGTAGTGAGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATACCTGTTTTTGACCAGCTTCCTGGAGAACGGAAAGTAGATTTACTCAGAAGCCTTGCAGAATTTTCACCTTATACAACACCACAAGATTCACGCCAAATGCTTCCTTCTATTGTTCAGTTGCTTAAGAAATACATGACTTGGAAGAAGACTGGAGAAGAGATGAACTTTACCTATGTTGAGTGCTTGTTGTACACATTTCATCACTTAGCTCATAAGGTTCCTAATGCGACAAATAGTTTATGTGGATACAAAATTGTTACTGGCCAGCCATCTGATAGGCTTGGAGAGGACTTTTCAGAGCATTATAATGATTTTACTGAGAGATTGAATAATGTTGAGGAGTTCACCCGGGCTACAATCAAGAAATTAACTCAAGGAATGGATGAAAACAACAAATCTATGGCCGGTGCTAAAACTGATGAAGAAAAGGAAAAAATTAAAACTAAAAAGCAGAATGCTACAACTGGGTTGCGGACTTGTAATAACATTTTGACAATGACAAAGCCATTGCACGCCAAAGTGCCTTCTTTTATTGGAGATAAGAGAATCAATCTTTCTTGGAAAGAAGCAACAAAAGCAGCATCTACTGCACCGGCTGCTGGAGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGTCTCAAAGAAAGGTCGAGGTGCTGGTGGTTTGCAAAATCAACTTGTCAATAGAGCGCTGGAAGGATTGTCTGGTGGTGGGAGAGGGGGTATGAGGGGCAGAGGCCGGGGCTGGGGTGGTCGTGGAAGAGGAAGAGGAGGGTATCATCGGTAA
>Glyma13g24090.1 sequence type=predicted peptide gene model=Glyma13g24090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDPAAEEAAFIEKLYEYGEQLNNAKDKSQNVQDYQGIIDAAKTSVKAKQLAAQLIPKFFKFFPDLSSPALDTHLDLVEAEELGVRVQAIRGLPLFCKDTPENIGKMVDILVQILGSEEFVERDAVHKALMSLLRQDVKASLTALFKHIGSVEEPSTDDVIREKVINFVRDKVFPIKAELLKPQEEMERHITDLIKKSLEDVTGIEFRMFMDFLKSLSLFGEKAPAERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLHMALPFVVRGASSNKFLNYINKYIIPVFDQLPGERKVDLLRSLAEFSPYTTPQDSRQMLPSIVQLLKKYMTWKKTGEEMNFTYVECLLYTFHHLAHKVPNATNSLCGYKIVTGQPSDRLGEDFSEHYNDFTERLNNVEEFTRATIKKLTQGMDENNKSMAGAKTDEEKEKIKTKKQNATTGLRTCNNILTMTKPLHAKVPSFIGDKRINLSWKEATKAASTAPAAGAKRPANAANGSNNIVSKKGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRGWGGRGRGRGGYHR* >Glyma13g24090.2 sequence type=predicted peptide gene model=Glyma13g24090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDPAAEEAAFIEKLYEYGEQLNNAKDKSQNVQDYQGIIDAAKTSVKAKQLAAQLIPKFFKFFPDLSSPALDTHLDLVEAEELGVRVQAIRGLPLFCKDTPENIGKMVDILVQILGSEEFVERDAVHKALMSLLRQDVKASLTALFKHIGSVEEPSTDDVIREKVINFVRDKVFPIKAELLKPQEEMERHITDLIKKSLEDVTGIEFRMFMDFLKSLSLFGEKAPAERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLHMALPFVVRGASSNKFLNYINKYIIPVFDQLPGERKVDLLRSLAEFSPYTTPQDSRQMLPSIVQLLKKYMTWKKTGEEMNFTYVECLLYTFHHLAHKVPNATNSLCGYKIVTGQPSDRLGEDFSEHYNDFTERLNNVEEFTRATIKKLTQGMDENNKSMAGAKTDEEKEKIKTKKQNATTGLRTCNNILTMTKPLHAKVPSFIGDKRINLSWKEATKAASTAPAAGAKRPANAANGSNNIVSKKGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRGWGGRGRGRGGYHR*
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