Glyma13g24080 - SoyBase

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Report for Sequence Feature Glyma13g24080

Feature Type:	gene_model
Chromosome:	Gm13
Start:	27414549
stop:	27418753
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g24080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G29120	AT	Annotation by Michelle Graham. TAIR10: glutamate receptor 2.7 \| chr2:12511479-12515893 REVERSE LENGTH=952	SoyBase	E_val: 6.00E-129	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006874	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular calcium ion homeostasis	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004970	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ionotropic glutamate receptor activity	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005217	GO-mf	Annotation by Michelle Graham. GO Molecular Function: intracellular ligand-gated ion channel activity	SoyBase	N/A	ISS
GO:0005234	GO-mf	Annotation by Michelle Graham. GO Molecular Function: extracellular-glutamate-gated ion channel activity	SoyBase	N/A	ISS
KOG1052	KOG	Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits	JGI		ISS
PTHR18966	Panther	IONOTROPIC GLUTAMATE RECEPTOR-RELATED	JGI		ISS
PTHR18966:SF6	Panther	gb def: agcp9714 [anopheles gambiae str. pest]	JGI		ISS
PF00060	PFAM	Ligand-gated ion channel	JGI		ISS
PF00497	PFAM	Bacterial extracellular solute-binding proteins, family 3	JGI		ISS
PF01094	PFAM	Receptor family ligand binding region	JGI		ISS
UniRef100_G7IK73	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutamate receptor 2.7 n=1 Tax=Medicago truncatula RepID=G7IK73_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M041	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M041_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g24080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g24080

Paralog	Evidence	Comments
Glyma07g32490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g24080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g172100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g24080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g24080

Limit To All Plant Sequences

>Glyma13g24080.2   sequence type=CDS   gene model=Glyma13g24080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCTTCCATCCACTATTCCTCTAGCACTTCCAACCTATTTATTCATTTCGTTTGTTCTAGTTAATTGCTACCATGCTGAGGCTACAAATGGAGACGACATGGTTATATCTATAGGAGCAATAATTGATGTTAACTCTCGGGTTGGGAAAGAACAGCTTGTAGCCATGGACCTTGCAGCTCAAAGTCACAATAACACTTCCAAGAGCCACAAGATGGCCCTTCATTTTCAGGAACCCACCAAAGATCCCTTCGGACCCACTTCTCTTGCTAGAAATATGATTAAAACACAGAAGGCGCAAGTGATTATAGGGATGCACACATGGACAGAAGCAGCTTCAGTGGCTGAATTAGGACGCGAAACTCTAGTTCCTGTCATATCCTTTGCAGCACCTACCATCACCCCACCATTGATGCCAACTCGCTGGCCTTTTTCGGTAAGAATGGCCAACAATGGTACTGCATATGCAAAATGTGTTGCAGATGTAGTACATGCTTATGGTTGGCAAAGAGTAGTAGTCATTTATGAAGATGGAGATTATGAGATGCTAGCTTTGCTATCTGAGACCCTCCAAGAAGTTGGTTCAATGATTGAGTACCGTTTAGCTCTTCCATCGCCTTCTTATCTACCTAATCCTGGAGAGTTTATTCGCGAAGAGTTGTATAATTTGATTAAAAATATACAATCCCGGGTGTTCATTGTTCTGCAATCATCATTAGAAATGGTGATCCATTTGTTCAGAGAAGCTTCACACATGGGACTTGTGGAAAGAGAATCAGCTTGGATAATCCCAGAGAGCATAACTAATTTGCTTGACACTGTCAACAAGTCTGCTATTTCCTACATGGAAGGAGCTTTAGGAATCAAGACCTACTACTCTAACCATAGCAATGAATATCAAGACTTTGAGGCTCAGTTCCGAAAATCTTTTCGGGCCAAGTATCCTGAGGAGGATAACTGTGATCCGGGATTTTACGCTCTGCAAGCATATGATAGCATTAAAATTGTTGCGCAAGCAATAGATAGAACGGCCAGTGGCAGAAAGACTTTGCTAACAGAAATACTATCTAGCAATTTCCCTGGCTTAAGTGGAGAAATTCGATTTGAAGCAGCCCAACTCTTGCAGAATCCTACCTTCAGGATGGTGAATGTAGATAAGAAGAGTTACAGAGAATTAGACTTTTGGACTCTAAAACGCGGGTTCATCACTAGCCTCACTACAGAACAAGGTTCAGATAGTGTTTCTAGGAACACAGAGAGTTTACGTGGTGTAATATGGCCAGGGAAACTAGTTAGATTTCCGAAGGGCTGGAATCTGCCTACTAAACAAAATCCAATGCAAATAGCAGTTCCTGGAAGAACCTCCTTTCCCGCGTTTGTTAAGGTTGATCCTGACGAGCATCATAATTCATATAAATTTAATGGATTCTGCATTGAACTTTTTAATAAGGTGATAGGGATTTTGAAGTATGATCTGCCGCATGAGTTTCATCCCATCAACGGAACCTATAACGATCTGGTTCAACTTGTCTATAACAAGTCTTACGCGGCAGCTATTGGAGACGTGACCATAACAGAAGACAGATTGAAATATGTAGACTTTACTGCGTCATATGCAGAATCAGGATTGTCAATGATAGTTACAGAAGAGTTCAAAGCACCGACATGGATGTTTACGAAGCCCTTCACCTGGCAAATGTGGTTGGCAACTGGTGCCGTGTTGATTTATACAATGGTAGTTGTGTGGTACCTTGAGAGGGAACCCAATCCTGAGTTTCATGGCAATTTGCAAAGCCAGATCAGCACTGCTCTTACGTTTACCTTCTCCTCTCTATTCTTTGCTCACAGGGAGAAAATCTATAGCCACTTATCTCGCATGGTGATGGTATCGTGGATGTTTCTAGTATTGATTCTTAGCTCAAGCTACACTGCTAGTCTTTCTTCGATTCTCACAGTTCAACGACTGCAACCAACTGTGACAGACATCCAGATCCTGAAGAACAACAACAAGAAAATTGGTTGTGACGGAGATTCATTTGTTAGGACATACCTGGAGACAGTCGAAGAGTTCAAGCCAGAGAACATCATAAACATTGGCAGTGAAAACAGTTATGATGATGCATTCAAAAACAACTCAATAGCAGCTGCTTTTCTCGAACTCCCTTATGAGAAAGTATATATCAGTAAATACTGCAAGGGATACTATGCCTTTGCAATCAACAAAAAATTTGGAGGACTGGGATTTATCTTCCAGAAAGGCTCACCAGTGGCCAGAGATTTTTCCAAAGCTATACTGCGTCTCTTGGAGGATGGAACAGTGAAGGAATTAGAAGACAAATGGTTGAAACCTGATGGAGACTGCCACAATAATTCGACCTCACAGGGTACAGAAAGTTTGAGGCTTGAAAGTTTCTGGGTTCTGTATGTGATCTATGGTGCCGCTTCTACTATTTGTTTTCTACTTCATACAATCCTGTCGCTGAAATCTAGACAAACAACCCGGGATGAGGCACGAGAAGGTAATGCCAACCCAGGTGAGGAAAGCCGATGA

Predicted protein sequences of Glyma13g24080

Limit To All Plant Sequences

>Glyma13g24080.2   sequence type=predicted peptide   gene model=Glyma13g24080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLPSTIPLALPTYLFISFVLVNCYHAEATNGDDMVISIGAIIDVNSRVGKEQLVAMDLAAQSHNNTSKSHKMALHFQEPTKDPFGPTSLARNMIKTQKAQVIIGMHTWTEAASVAELGRETLVPVISFAAPTITPPLMPTRWPFSVRMANNGTAYAKCVADVVHAYGWQRVVVIYEDGDYEMLALLSETLQEVGSMIEYRLALPSPSYLPNPGEFIREELYNLIKNIQSRVFIVLQSSLEMVIHLFREASHMGLVERESAWIIPESITNLLDTVNKSAISYMEGALGIKTYYSNHSNEYQDFEAQFRKSFRAKYPEEDNCDPGFYALQAYDSIKIVAQAIDRTASGRKTLLTEILSSNFPGLSGEIRFEAAQLLQNPTFRMVNVDKKSYRELDFWTLKRGFITSLTTEQGSDSVSRNTESLRGVIWPGKLVRFPKGWNLPTKQNPMQIAVPGRTSFPAFVKVDPDEHHNSYKFNGFCIELFNKVIGILKYDLPHEFHPINGTYNDLVQLVYNKSYAAAIGDVTITEDRLKYVDFTASYAESGLSMIVTEEFKAPTWMFTKPFTWQMWLATGAVLIYTMVVVWYLEREPNPEFHGNLQSQISTALTFTFSSLFFAHREKIYSHLSRMVMVSWMFLVLILSSSYTASLSSILTVQRLQPTVTDIQILKNNNKKIGCDGDSFVRTYLETVEEFKPENIINIGSENSYDDAFKNNSIAAAFLELPYEKVYISKYCKGYYAFAINKKFGGLGFIFQKGSPVARDFSKAILRLLEDGTVKELEDKWLKPDGDCHNNSTSQGTESLRLESFWVLYVIYGAASTICFLLHTILSLKSRQTTRDEAREGNANPGEESR*

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