Glyma13g24070 - SoyBase

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Report for Sequence Feature Glyma13g24070

Feature Type:	gene_model
Chromosome:	Gm13
Start:	27399608
stop:	27404534
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g24070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33990	AT	Annotation by Michelle Graham. TAIR10: IQ-domain 9 \| chr2:14360502-14361630 REVERSE LENGTH=263	SoyBase	E_val: 3.00E-80	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_G7IK83	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: IQ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7IK83_MEDTR	SoyBase	E_val: 2.00E-113	ISS
UniRef100_I1M040	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M040_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g24070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g24070

Paralog	Evidence	Comments
Glyma07g32531	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g24070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g172000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g24070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g24070

Limit To All Plant Sequences

>Glyma13g24070.2   sequence type=transcript   gene model=Glyma13g24070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTTCTCTTTGTATTCATATTTACTTCCTCTTTACTTCTATGCAGATATAATTGTCCCCCACTTCCTTTTTTTCATCCAGAAATCTTGTTGCCCAAGTGAAGAAAAAAGGGTTGCCTTGGACACTTCTCACCTTGTTTTCTGAGTTATGTTAATTTGAAAGAAGCTACGTGGCATCAAGAATGGGTTCAGGTGATTGGGTTTTAAGACAATAATTAGCTCAAGAAAATCAAAAGAAGGAAGATCAAAGAAATTAAAGACTAAGATTTATACAAGAAAAAAGTCCAATGGTTTAGCAAATGGAATGAAAAGCGAAAATCTAGAGTCAGATGGGGTATCAGTTGAAACTATTGCTGCAACAAGGATCCAAACAGCATTCCGAGCTTATAAGGCTAGAAAATATTTACACCGCTTGAGAGGATTCACAAAACTGAAGATCCAGACTCAAGGTTCCTCTGCTAAAAAACAAGCCGTTACCACTATAACTTATCTTCATTCATGGAGCAAGATACAGGCTGAGATTAGAGCTCGTCGTATATGTATGGTTACAGAAGACAGAATCAGGCGGAAGATAATACATTCTCAACTAAAACTTGAGGCCAAGATTCATGACCTGGAGGTGGAATGGTGTAGTGGTTCTGAAACCAAGAAGGAAATCCTTTCAAGGTTACATCAAAGAGAAGAAGCAGCAGTCAAGAGGGAAAGAACCATGGCATATGCCTTCTCTCATCAGTGGAGGGCCAGCTCTAGCCAAGGGCTAGGTAATTATGAACTTGGCAAAGCTAGTTGGAGTTGGAGCTGGAAGGATCGTTGGATTGCTGCACGCCCTTGGGAAAGCCGCGTACCAAGTGTAACAAACACTAGCCCCGAGAAAGATCAAAATAAGAAGCCAAGAAAAGTTCAGAAGGATAGGAATTCACCAACATCAAAAAAACCAGTTTCAGTTAAAACTCCTTCAGCTAATGCTAAAGGGACAAAACCTTTAAGTAATGCAAAAGGAACTACTAAAGCTAGAAGAAGGTTGTCTTACCCTGCTGCCACAGAGAAAAAAGCAGTGCCTGCTGAAGGAAAGCAATGAGTACTCAGAACAAAAGCATGCATATTTGATCAAAGCCTACATCATCATGTTAACATTAACAGAGTCAAGTTCAGTTTCAAGTGGTTACAGTCAGTGTGTGTGTGCGTGTGTGTAAAGATAAAAAGACAATCTGTTTTTCTTTATTCATTGGATTGCTTCCTTCCAATTTGTGCATATGAATGTGAGTGAAATTCAATGACCTTAGTGATAGAAAATGAAACAACAAACTTGCATATGTGTGTTTTGGTGATTGGTTTTTCTTTCTTCAATCTTGTATGTTTAGTGCAGTGAGGAGACAAATTATAGGTAGATCAATTATCCTTCCCCCCCCCCCCCACCTTTGTTTGCTGTAATAGAAAAGATTTTTTGAAGCTGCGATCTTCTGTCCAACAAGTCGACACTATAGAATGTTATTTTTCAACTTTATTACTCTCTCTGTTTTTTTTATAAGAAATAAG

Coding sequences of Glyma13g24070

Limit To All Plant Sequences

>Glyma13g24070.1   sequence type=CDS   gene model=Glyma13g24070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGCGAAAATCTAGAGTCAGATGGGGTATCAGTTGAAACTATTGCTGCAACAAGGATCCAAACAGCATTCCGAGCTTATAAGGCTAGAAAATATTTACACCGCTTGAGAGGATTCACAAAACTGAAGATCCAGACTCAAGGTTCCTCTGCTAAAAAACAAGCCGTTACCACTATAACTTATCTTCATTCATGGAGCAAGATACAGGCTGAGATTAGAGCTCGTCGTATATGTATGGTTACAGAAGACAGAATCAGGCGGAAGATAATACATTCTCAACTAAAACTTGAGGCCAAGATTCATGACCTGGAGGTGGAATGGTGTAGTGGTTCTGAAACCAAGAAGGAAATCCTTTCAAGGTTACATCAAAGAGAAGAAGCAGCAGTCAAGAGGGAAAGAACCATGGCATATGCCTTCTCTCATCAGTGGAGGGCCAGCTCTAGCCAAGGGCTAGGTAATTATGAACTTGGCAAAGCTAGTTGGAGTTGGAGCTGGAAGGATCGTTGGATTGCTGCACGCCCTTGGGAAAGCCGCGTACCAAGTGTAACAAACACTAGCCCCGAGAAAGATCAAAATAAGAAGCCAAGAAAAGTTCAGAAGGATAGGAATTCACCAACATCAAAAAAACCAGTTTCAGTTAAAACTCCTTCAGCTAATGCTAAAGGGACAAAACCTTTAAGTAATGCAAAAGGAACTACTAAAGCTAGAAGAAGGTTGTCTTACCCTGCTGCCACAGAGAAAAAAGCAGTGCCTGCTGAAGGAAAGCAATGA

>Glyma13g24070.2   sequence type=CDS   gene model=Glyma13g24070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGCGAAAATCTAGAGTCAGATGGGGTATCAGTTGAAACTATTGCTGCAACAAGGATCCAAACAGCATTCCGAGCTTATAAGGCTAGAAAATATTTACACCGCTTGAGAGGATTCACAAAACTGAAGATCCAGACTCAAGGTTCCTCTGCTAAAAAACAAGCCGTTACCACTATAACTTATCTTCATTCATGGAGCAAGATACAGGCTGAGATTAGAGCTCGTCGTATATGTATGGTTACAGAAGACAGAATCAGGCGGAAGATAATACATTCTCAACTAAAACTTGAGGCCAAGATTCATGACCTGGAGGTGGAATGGTGTAGTGGTTCTGAAACCAAGAAGGAAATCCTTTCAAGGTTACATCAAAGAGAAGAAGCAGCAGTCAAGAGGGAAAGAACCATGGCATATGCCTTCTCTCATCAGTGGAGGGCCAGCTCTAGCCAAGGGCTAGGTAATTATGAACTTGGCAAAGCTAGTTGGAGTTGGAGCTGGAAGGATCGTTGGATTGCTGCACGCCCTTGGGAAAGCCGCGTACCAAGTGTAACAAACACTAGCCCCGAGAAAGATCAAAATAAGAAGCCAAGAAAAGTTCAGAAGGATAGGAATTCACCAACATCAAAAAAACCAGTTTCAGTTAAAACTCCTTCAGCTAATGCTAAAGGGACAAAACCTTTAAGTAATGCAAAAGGAACTACTAAAGCTAGAAGAAGGTTGTCTTACCCTGCTGCCACAGAGAAAAAAGCAGTGCCTGCTGAAGGAAAGCAATGA

Predicted protein sequences of Glyma13g24070

Limit To All Plant Sequences

>Glyma13g24070.1   sequence type=predicted peptide   gene model=Glyma13g24070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSENLESDGVSVETIAATRIQTAFRAYKARKYLHRLRGFTKLKIQTQGSSAKKQAVTTITYLHSWSKIQAEIRARRICMVTEDRIRRKIIHSQLKLEAKIHDLEVEWCSGSETKKEILSRLHQREEAAVKRERTMAYAFSHQWRASSSQGLGNYELGKASWSWSWKDRWIAARPWESRVPSVTNTSPEKDQNKKPRKVQKDRNSPTSKKPVSVKTPSANAKGTKPLSNAKGTTKARRRLSYPAATEKKAVPAEGKQ*

>Glyma13g24070.2   sequence type=predicted peptide   gene model=Glyma13g24070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSENLESDGVSVETIAATRIQTAFRAYKARKYLHRLRGFTKLKIQTQGSSAKKQAVTTITYLHSWSKIQAEIRARRICMVTEDRIRRKIIHSQLKLEAKIHDLEVEWCSGSETKKEILSRLHQREEAAVKRERTMAYAFSHQWRASSSQGLGNYELGKASWSWSWKDRWIAARPWESRVPSVTNTSPEKDQNKKPRKVQKDRNSPTSKKPVSVKTPSANAKGTKPLSNAKGTTKARRRLSYPAATEKKAVPAEGKQ*

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