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Report for Sequence Feature Glyma13g23930

Feature Type:gene_model
Chromosome:Gm13
Start:27235111
stop:27236512
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g23930
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G48030AT Annotation by Michelle Graham. TAIR10: hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein | chr3:17725410-17727954 REVERSE LENGTH=349 SoyBaseE_val: 5.00E-17ISS
GO:0001666GO-bp Annotation by Michelle Graham. GO Biological Process: response to hypoxia SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR14155Panther RING FINGER PROTEIN 6/12/38 JGI ISS
PTHR14155:SF2Panther RING-FINGER PROTEIN JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_B9RUA7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RUA7_RICCO SoyBaseE_val: 9.00E-46ISS
UniRef100_I1M024UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M024_SOYBN SoyBaseE_val: 2.00E-130ISS

Expression Patterns of Glyma13g23930
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g23930
ParalogEvidenceComments
Glyma19g01341 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g23930 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g170300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g23930
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g23930
>Glyma13g23930.1   sequence type=CDS   gene model=Glyma13g23930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGTTATTTTAACAGTGGTGTTATTATTTGTTGGATTTGTGTTCCTGGTCCTACTTCATGTTTGTTTTTCCGAGAGACTCTTTAGGAGAGGATCAATGGTTGAGAGGGGTGCAAATGTAGGCAGAAGCATGTCCATAGATGACTTGGAGATGCTTCCATGTTATGATTATGTTGCCAAAGGCAACACAAGCAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAACCTCATCACAGGAGATAAGTGCAGATTGTTACCTATGTGCAAGCACAGTTTTCATGCCCAATGTGTGGACACATGGCTTCTAAAGACACCCATATGTCCAATTTGCAGGTGTAATGCTCATTCTCATAGTGGAAACCAAGTTGTAGGTAACAATGACTACTTTGTTGCACCAAATAGTGGGTCTAGGGAGAGCCAAAGTCAGCAACATGACAATATGGTATTGGTGCAGTTGAGAGAAAGCCTAGAAAATGTTCCATCCACAAATGTTGACATAGAAAATCCAACATTAGGAAGTCACAACTTGGTCAGAGAGCACTAA
Predicted protein sequences of Glyma13g23930
>Glyma13g23930.1   sequence type=predicted peptide   gene model=Glyma13g23930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVILTVVLLFVGFVFLVLLHVCFSERLFRRGSMVERGANVGRSMSIDDLEMLPCYDYVAKGNTSSPVDCAVCLENLITGDKCRLLPMCKHSFHAQCVDTWLLKTPICPICRCNAHSHSGNQVVGNNDYFVAPNSGSRESQSQQHDNMVLVQLRESLENVPSTNVDIENPTLGSHNLVREH*






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