SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G40280 | AT | Annotation by Michelle Graham. TAIR10: Prenyltransferase family protein | chr5:16101391-16104783 FORWARD LENGTH=482 | SoyBase | E_val: 5.00E-173 | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009934 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem structural organization | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0018342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein prenylation | SoyBase | N/A | ISS |
| GO:0005965 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: protein farnesyltransferase complex | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004311 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: farnesyltranstransferase activity | SoyBase | N/A | ISS |
| GO:0004660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein farnesyltransferase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0366 | KOG | Protein geranylgeranyltransferase type II, beta subunit | JGI | ISS | |
| PTHR11774 | Panther | GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT | JGI | ISS | |
| PTHR11774:SF6 | Panther | PROTEIN FARNESYLTRANSFERASE BETA SUBUNIT (CAAX FARNESYLTRANSFERASE BETA SUBUNIT) (RAS PROTEINS PRENYLTRANSFERASE BETA) (FTASE-BETA) | JGI | ISS | |
| PF00432 | PFAM | Prenyltransferase and squalene oxidase repeat | JGI | ISS | |
| UniRef100_I1M003 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M003_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q04903 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein farnesyltransferase subunit beta n=1 Tax=Pisum sativum RepID=FNTB_PEA | SoyBase | E_val: 0 | ISS |
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Glyma13g23780 not represented in the dataset |
Glyma13g23780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g01190 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g168600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g23780.1 sequence type=CDS gene model=Glyma13g23780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTGAAGAGAGCGAGAGAGAGACAAATCCGCCGCCGCCGCCGCCGTGTCCGACGGTGAGTCAACGTGAGCAATGGATGGTAGAGTCGCAGGTGTTTCAGATTTACCAACTCTTCGCCACCATTCCTCGCAACGCCCAAACCCTCATGTTGGAGCTTCAACGCGATAATCACATGCAGTATGTCTCCAAAGGCCTTCGCCATCTCAGTTCCGCATTTTCCGTTTTGGACGCTAATCGACCCTGGCTCTGCTACTGGATCTTCCACTCCATTGCTTTGTCGGGAGAATCCGTCGATGATGAACTCGAAGATAACGCTATCGATTTTCTTAACCGTTGCCAGGATCCGAATGGTGGATATGCCGGGGGACCAGGCCAGATGCCTCATATTGCCACAACTTATGCTGCTGTTAATTCACTTATTACTTTGGGTGGTGAGAAATCCCTGGCATCAATTAATAGAGATAAACTGTATGGGTTTCTGCGGCGGATGAAGCAACCAAATGGTGGATTCAGGATGCATGATGAAGGTGAAATTGATGTTCGAGCTTGCTACACTGCCATTTCTGTTGCAAGTGTTTTGAACATTTTGGATGATGAGCTGATCCAGAATGTTGGAGACTACATTATAAGCTGTCAAACATATGAGGGTGGCATTGCTGGTGAGCCTGGTTCTGAGGCTCATGGTGGGTACACCTTTTGTGGATTAGCTACAATGATTCTGATTGGTGAGGTTAATCACTTGGATCTGCCTCGATTAGTTGACTGGGTGGTATTCCGACAAGGTAAGGAATGTGGATTCCAGGGGAGAACAAATAAACTGGTGGATGGATGCTATTCCTTTTGGCAGGGAGGTGCTGTTGCTCTATTGCAAAGATTATCTTCTATTATCAACAAACAGATGGAAGAGACATCACAGATTTTTGCGGTATCTTATGTATCTGAAGCAAAAGAAAGTTTGGATGGAACCTCTAGTCATGCAACATGCCGTGGTGAGCATGAAGGCACCAGTGAATCCAGTTCATCTGATTTTAAAAATATTGCCTATAAATTTATTAATGAGTGGAGAGCACAAGAACCACTTTTTCACAGTATTGCTTTACAGCAATATATTCTCTTATGTGCACAGGAGCAAGAGGGTGGACTGAGAGACAAACCGGGTAAACGTAGAGATCATTATCACACATGTTACTGTTTAAGTGGACTCTCATTGTGCCAGTATAGTTGGTCAAAGCACCCAGATTCTCCACCACTGCCTAATCTAGTATTAGGCCCCTACTCTAATCTCTTAGAACCAATCCACCCCCTCTTTAATGTTGTCTTGGGACGATATCGTGAAGCTCATGAATTCTTCTTTACTGAGTCGTGA
>Glyma13g23780.1 sequence type=predicted peptide gene model=Glyma13g23780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSEESERETNPPPPPPCPTVSQREQWMVESQVFQIYQLFATIPRNAQTLMLELQRDNHMQYVSKGLRHLSSAFSVLDANRPWLCYWIFHSIALSGESVDDELEDNAIDFLNRCQDPNGGYAGGPGQMPHIATTYAAVNSLITLGGEKSLASINRDKLYGFLRRMKQPNGGFRMHDEGEIDVRACYTAISVASVLNILDDELIQNVGDYIISCQTYEGGIAGEPGSEAHGGYTFCGLATMILIGEVNHLDLPRLVDWVVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLSSIINKQMEETSQIFAVSYVSEAKESLDGTSSHATCRGEHEGTSESSSSDFKNIAYKFINEWRAQEPLFHSIALQQYILLCAQEQEGGLRDKPGKRRDHYHTCYCLSGLSLCQYSWSKHPDSPPLPNLVLGPYSNLLEPIHPLFNVVLGRYREAHEFFFTES*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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