Report for Sequence Feature Glyma13g23750
Feature Type: gene_model
Chromosome: Gm13
Start: 27071551
stop: 27074326
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g23750
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G20110 AT
Annotation by Michelle Graham. TAIR10: Dynein light chain type 1 family protein | chr5:6791542-6793253 REVERSE LENGTH=209
SoyBase E_val: 9.00E-54 ISS
GO:0007017 GO-bp
Annotation by Michelle Graham. GO Biological Process: microtubule-based process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005875 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: microtubule associated complex
SoyBase N/A ISS
GO:0003777 GO-mf
Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity
SoyBase N/A ISS
KOG3430
KOG
Dynein light chain type 1
JGI ISS
PTHR11886 Panther
DYNEIN LIGHT CHAIN
JGI ISS
PTHR11886:SF9 Panther
CYTOPLASMIC DYNEIN LIGHT CHAIN
JGI ISS
PF01221 PFAM
Dynein light chain type 1
JGI ISS
UniRef100_G7JVC8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Dynein light chain n=1 Tax=Medicago truncatula RepID=G7JVC8_MEDTR
SoyBase E_val: 2.00E-115 ISS
UniRef100_I1M000 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M000_SOYBN
SoyBase E_val: 2.00E-137 ISS
Expression Patterns of Glyma13g23750
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g23750
Paralog Evidence Comments
Glyma17g12491 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g23750 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g168300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g23750
Coding sequences of Glyma13g23750
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g23750.2 sequence type=CDS gene model=Glyma13g23750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTAACCAAGACAAGCAACACAAGAGAGCGTTCATGTACATTTACAAAGGTGGCACAGTAAACCAGAGAAAGAAAGAGTTGGAGCATGGTGTGGGACAGGACAAGAAATCCAAATCACGCAGTTGGTTGCACAGGATTTCAAGAACTCGAATTTTTAATGATGGCCACAGAGACTTGGACATTGGAGCAAGAGGAGAAGGAGAATTTGTTGAAGCAAGGAAATCAATGTCTTGCTTGGAGTTAGGATCACCAGCAGGAGGGTATGTTGAGGGAAGAAAATCGGTGTCTTTCATAGAGGCAGCAGCATCACCAGCCGCGATTGGAAGCATAGTTGAGGAGAGAAGAAAGTCAGTGTCCCACATCGAGAAGAACTTTGCAGTAGCGGGAATGGTTGAAGCACGAAAGTCGGTGTCCCACATCGAAACGTTGTCCTCTGTGATTGCGTATCTTCAAGTTAAGGTTTTGGTCTCGGACATGCCAAGCTTCATGCAAGTGCATGCCTTTCGTTGTGCGAGAAGGACTTATGATAGCTTGGAGAAGTTTAGCGCAAAACACATCGCTCATAACATAAAGAAGGAATTTGACAAAGCGTATGGTCCGGTCTGGCATTGCATTGTAGGCTCAAATTTTGGTTCATTCGTGACACACTCAACGGGGTGTTTTCTTTATTTTTCTATGGAAAATTTATATATACTACTGTTCAAGACCAAAGTTAAGAAGGCGTTGGATTAA
Predicted protein sequences of Glyma13g23750
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g23750.2 sequence type=predicted peptide gene model=Glyma13g23750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MANQDKQHKRAFMYIYKGGTVNQRKKELEHGVGQDKKSKSRSWLHRISRTRIFNDGHRDLDIGARGEGEFVEARKSMSCLELGSPAGGYVEGRKSVSFIEAAASPAAIGSIVEERRKSVSHIEKNFAVAGMVEARKSVSHIETLSSVIAYLQVKVLVSDMPSFMQVHAFRCARRTYDSLEKFSAKHIAHNIKKEFDKAYGPVWHCIVGSNFGSFVTHSTGCFLYFSMENLYILLFKTKVKKALD*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
