Report for Sequence Feature Glyma13g23570
Feature Type: gene_model
Chromosome: Gm13
Start: 26958090
stop: 26959787
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g23570
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G15360 AT
Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr1:5283609-5284506 FORWARD LENGTH=199
SoyBase E_val: 2.00E-73 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009414 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to water deprivation
SoyBase N/A ISS
GO:0009873 GO-bp
Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway
SoyBase N/A ISS
GO:0010143 GO-bp
Annotation by Michelle Graham. GO Biological Process: cutin biosynthetic process
SoyBase N/A ISS
GO:0010166 GO-bp
Annotation by Michelle Graham. GO Biological Process: wax metabolic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
PF00847 PFAM
AP2 domain
JGI ISS
UniRef100_G7JD02 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ethylene-responsive transcription factor WIN1 n=1 Tax=Medicago truncatula RepID=G7JD02_MEDTR
SoyBase E_val: 7.00E-112 ISS
UniRef100_I1LZX9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZX9_SOYBN
SoyBase E_val: 4.00E-176 ISS
Expression Patterns of Glyma13g23570
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g23570
Paralog Evidence Comments
Glyma17g12330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g23570 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g166700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g23570
Coding sequences of Glyma13g23570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g23570.1 sequence type=CDS gene model=Glyma13g23570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGCAATCAAAGAAGTTTAGAGGTGTCAGGCAGCGCCATTGGGGTTCCTGGGTATCCGAAATTCGCCACCCACTTCTGAAGAGAAGGGTGTGGCTAGGGACATTTGAAACAGCAGAAGAGGCTGCTAGAGCCTATGATCAAGCTGCGATTCTGATGAGTGGGAGAAATGCCAAGACCAATTTCCCAATAACCCAAACTCCAGAAGGTGATCCAAAGAGCACTAACAGCGAGGACACTCCCTCCACCACCTCGAAGGATCTGGAGGAAATCTTACATGCAAAGCTTCGCAAATGTAGCAAGGTGCCTTCACCTTCTATGACTTGTTTGAGGCTTGACACAGAGAACTCACACATCGGAGTGTGGCAAAAGCGTGCTGGGAGGCGTTCTGATTCAAATTGGGTCATGACGGTTCAGCTGGGAAAGAAAACTGTTAATAATAATGAGACTCATCAAGCTGATAGTAGCAGTAGTAGTTCTCTTTCTTCTTCTCTACCTTCTTCTCAACATCACCACCATGAGTCTCCATCATTGAGTGTGGCAGGTAATCTTCATCACCATCAAGAAGTCGTGAGAGGAGAGATTGATGAAGAGGAGAGAATTGCCCTTCAGATGATAGAGGAGCTCCTCAACGACAGAAACTGCCCTAGCCCATCATTTGACAACAACATTCAAGAAAGGGATGGTGCTGATCATCATGACAACTTTTTTCTTTAA
Predicted protein sequences of Glyma13g23570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g23570.1 sequence type=predicted peptide gene model=Glyma13g23570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSTNSEDTPSTTSKDLEEILHAKLRKCSKVPSPSMTCLRLDTENSHIGVWQKRAGRRSDSNWVMTVQLGKKTVNNNETHQADSSSSSSLSSSLPSSQHHHHESPSLSVAGNLHHHQEVVRGEIDEEERIALQMIEELLNDRNCPSPSFDNNIQERDGADHHDNFFL*