Report for Sequence Feature Glyma13g23510
Feature Type: gene_model
Chromosome: Gm13
Start: 26899938
stop: 26903713
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g23510
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G25490 AT
Annotation by Michelle Graham. TAIR10: EIN3-binding F box protein 1 | chr2:10848018-10850275 REVERSE LENGTH=628
SoyBase E_val: 0 ISS
GO:0006511 GO-bp
Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process
SoyBase N/A ISS
GO:0009723 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus
SoyBase N/A ISS
GO:0010105 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of ethylene mediated signaling pathway
SoyBase N/A ISS
GO:0042752 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0004842 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
KOG1947
KOG
Leucine rich repeat proteins, some proteins contain F-box
JGI ISS
PTHR23125 Panther
F-BOX/LEUCINE RICH REPEAT PROTEIN
JGI ISS
PTHR23125:SF106 Panther
EBF1 (EIN3-BINDING F BOX PROTEIN 1), UBIQUITIN-PRO
JGI ISS
UniRef100_B9SET7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Grr1, plant, putative n=1 Tax=Ricinus communis RepID=B9SET7_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1LZX2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZX2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g23510
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g23510
Paralog Evidence Comments
Glyma17g12270 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g23510 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g166200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g23510
Coding sequences of Glyma13g23510
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g23510.1 sequence type=CDS gene model=Glyma13g23510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCTGCCCTTGTCAATTACAGTGGTGATGATGAACTGTACCCTGGGGGTTCTTTTTGCCCAAATCCAATGGAGTTGGGTCGCTTGTACACTACTATTGGCTCCAATTTGGATATGTACTACCCTCCTACTAAGAGACCACGCTCCATCTTTGAAGCTATTGAGCGTGAGCAGTATTATCAAGACCCTGGTATTGAGGTTCTTCCAGATGAATGCCTCTTTGAGATATTCAGACGCCTCCCTAGTGGCAAAGAGAGAAGCTCATGTGCCTGTGTATCTAAACGGTGGCTTATGCTTATGAGCACTATCTGTAAAGATGAGATTGAGGGGACTACTTCTGTTGCTGAAACTGTTTCTTCTGATGAGAATCAAGATATTGATGATGATGGCTACCTTACAAGGTGTCTAGATGGGAAGAAAGCCACTGATGTGAGGCTTGCTGCAATTGCAGTTGGGACTAGTAGCCGTGGCGGTCTAGGGAAGCTTTCAATCAGAGGAAGCAACTCTGAGCGTGGTGTCACAAACCTTGGCCTCTCTGCAGTTGCTCATGGTTGCCCTTCTCTCAGATCACTTTCTTTATGGAATGTATCTACCATTGGGGATGAGGGTCTGTCTCAGGTAGCAAAAGGATGTCATATGTTGGAGAAGCTTGACTTGTGTCATTGTTCCTCAATCAGCAACAAGGGTTTGATTGCAATAGCTGAAGGTTGCCCCAACTTGACCACCTTAACTATTGAATCATGCCCAAATATTGGAAATGAAGGTTTGCAAGCTACTGCAAGGCTATGCCCCAAGCTGCAGTCCATCTCAATCAAGGATTGCCCTCTTGTTGGGGATCATGGAGTGTCTAGTCTTTTGGCATCGGCTTCAAATTTATCAAGGGTTAAGCTTCAGACTTTGAACATCACAGATTTCTCTTTGGCTGTTATTTGCCATTATGGAAAAGCGATAACAAATCTGGTCCTCTCTGGTCTAAAAAATGTAACTGAAAGGGGGTTCTGGGTCATGGGGGCTGCTCAAGGTCTGCAGAAACTACTGTCACTTACTGTTACTGCCTGCAGGGGGGTAACTGATACAAGCATTGAAGCCATTGGTAAAGGTTGCATCAACCTGAAGCACTTGTGCCTTCGCCGGTGTTGTTTTGTGTCTGACAATGGATTGGTAGCATTTGCCAAAGCTGCAATATCTCTTGAAAGTTTGCAGCTGGAGGAGTGCAACAGGTTCACTCAGTCTGGGATTATTGTTGCCCTTGCAGACATCAAAACGAAGTTGAAATCTCTTGCCCTTGTGAAGTGCATGGGAGTCAAAGATATCGATATGGAAGTGTCTATGCTTTCTCCTTGCGAGTCTCTTCAATCTTTAGCCATTCAAAAGTGCCCTGGTTTTGGTAGTGCTAGCCTGGCCACGATTGGAAAATTGTGTCCCCAACTTCAGCATCTTAATCTGACTGGACTCTATGGCATAACTGATGCTGGCCTTCTCCCCCTTTTGGAGAATTGTGAGGCTGGACTTGTCAATGTAAACCTCACTGGTTGCTGGAACTTGACAGATAATATAGTTTCAGCCTTGGCCAGGCTACATGGTGGAACCCTCGAAGTACTAAATCTTGATGGATGCTGGAAAATTACTGATGCAAGCTTGGTTGCAATTGCAAACAACTTCCTAGTGCTTAATGATCTAGATGTGTCAAAGTGTGCAATCACCGATGCCGGTGTAGCTGTTCTCTCAAGGGCCAGTCTGCCTAGCTTGCAAGTGCTTTCGTTGTCTGGTTGTTCTGATGTATCAAACAAGAGTGCGCCTTTCCTGACAAAATTGGGCCAGACCTTGCTGGGATTGAATCTTCAAAACTGCAATTCAATTGGCAGCAGCACAATGGAGTTGCTAGTGGAGAAGTTGTGGAGATGTGATATTCTGGCTTAA
Predicted protein sequences of Glyma13g23510
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g23510.1 sequence type=predicted peptide gene model=Glyma13g23510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPALVNYSGDDELYPGGSFCPNPMELGRLYTTIGSNLDMYYPPTKRPRSIFEAIEREQYYQDPGIEVLPDECLFEIFRRLPSGKERSSCACVSKRWLMLMSTICKDEIEGTTSVAETVSSDENQDIDDDGYLTRCLDGKKATDVRLAAIAVGTSSRGGLGKLSIRGSNSERGVTNLGLSAVAHGCPSLRSLSLWNVSTIGDEGLSQVAKGCHMLEKLDLCHCSSISNKGLIAIAEGCPNLTTLTIESCPNIGNEGLQATARLCPKLQSISIKDCPLVGDHGVSSLLASASNLSRVKLQTLNITDFSLAVICHYGKAITNLVLSGLKNVTERGFWVMGAAQGLQKLLSLTVTACRGVTDTSIEAIGKGCINLKHLCLRRCCFVSDNGLVAFAKAAISLESLQLEECNRFTQSGIIVALADIKTKLKSLALVKCMGVKDIDMEVSMLSPCESLQSLAIQKCPGFGSASLATIGKLCPQLQHLNLTGLYGITDAGLLPLLENCEAGLVNVNLTGCWNLTDNIVSALARLHGGTLEVLNLDGCWKITDASLVAIANNFLVLNDLDVSKCAITDAGVAVLSRASLPSLQVLSLSGCSDVSNKSAPFLTKLGQTLLGLNLQNCNSIGSSTMELLVEKLWRCDILA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
