Glyma13g23500 - SoyBase

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Report for Sequence Feature Glyma13g23500

Feature Type:	gene_model
Chromosome:	Gm13
Start:	26882528
stop:	26890223
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g23500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G35410	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr5:13634933-13638062 FORWARD LENGTH=446	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009705	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
KOG0583	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24344	Panther	SERINE/THREONINE-PROTEIN KINASE CDS1	JGI		ISS
PTHR24344:SF45	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF03822	PFAM	NAF domain	JGI		ISS
UniRef100_I1LZX1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZX1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q53UK3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ser/Thr protein kinase n=1 Tax=Lotus japonicus RepID=Q53UK3_LOTJA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g23500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g23500

Paralog	Evidence	Comments
Glyma17g12250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g23500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g166100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g23500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g23500

Limit To All Plant Sequences

>Glyma13g23500.1   sequence type=CDS   gene model=Glyma13g23500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGGTGAGGAGAAAGATCGGCAAGTATGAGGTGGGTCGAACAATTGGCGAAGGCACCTTCGCCAAGGTTAAGTTCGCAAGAAACTCGGAGACAGGGGATAGCGTGGCTATTAAAATCATGGCTAAGACCACCATTCTCCAGCACAGAATGGTTGAACAGATTAAAAGAGAGATATCCATTATGAAGATTGTCAGGAATCCTAATATAGTTAGATTACACGAGGTTTTGGCTAGCCAGACCAGGATCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTGTTCAGCAGGGAAAGCTTTCTGAAAATGAATCTAGGCGCTACTTTCAACAACTTATAGACACAGTTGATCATTGTCATAGAAAGGGTGTGTACCATAGAGACTTGAAGCCTGAAAATCTTCTTCTTGATGCTTACGGAAATTTGAAGGTTTCTGACTTTGGATTGAGTGCATTGACTAAACAGGGTGTTGACCTTCTTCACACCACTTGTGGGACCCCAAACTATGTTGCCCCTGAGGTACTCAGCAATAGAGGATATGATGGTGCAGCAGCTGATGTTTGGTCATGTGGAGTCATCCTATATGTTCTAATGGCTGGATATCTTCCTTTTGAGGAGGCAGACCTTCCAACACTGTATAGAAGGATAAATGCTGCAGAATTTGTTTGCCCATTCTGGTTTTCTGCAGACACAAAGTCATTCATACAAAAAATTCTGGATCCTAATCCTAAAACACGGGTGAAAATTGAAGAAATAAGGAAAGAGCCATGGTTCAAGAAAAACTATTTTCCTGTCAAACTCGGGGAAGACGAGCAAGTGAATTTGGATGATGTTCGAGCTGTTTTTGATGATATTGAGGACCAATATGTTGCTGAAAGGTCAGAAATTACTGAGGGAGGTCCTCTGATAATGAATGCATTTGAGATGATTGCCTTATCACAAGGGTTGAATCTTTCACCACTATTTGATAGGCTTCAGGATAATGTAAAGCGGCAAACTCGTTTTGTCTCCCGTAAACCAGCAAAAGTTATAATTTCTTCAATTGAAGCTGTTGCAGAGTCAATGGGTCTTAAGGTCCATTCTCGCAATTACAAGGTGAGGCTTGAAGGCGTTTCTGCAAACAGGGTTGGACCATTTGCTGTGGTCTTGGAGGTGTTTGAAGTTGCACCATCCCTTTTCATGGTTGATGTTCGGAGGGCCACCGGGGATACTTTTGACTACCACAAGTTTTACATGAATTTTTGTGCCAAACTAGGAAACATTATTTGGAGACCGGCAGGGACTATGCCAAATTCTAATCTGCTCAAGCAAATGACTTTATAA

Predicted protein sequences of Glyma13g23500

Limit To All Plant Sequences

>Glyma13g23500.1   sequence type=predicted peptide   gene model=Glyma13g23500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKVRRKIGKYEVGRTIGEGTFAKVKFARNSETGDSVAIKIMAKTTILQHRMVEQIKREISIMKIVRNPNIVRLHEVLASQTRIYIILEFVMGGELYDKIVQQGKLSENESRRYFQQLIDTVDHCHRKGVYHRDLKPENLLLDAYGNLKVSDFGLSALTKQGVDLLHTTCGTPNYVAPEVLSNRGYDGAAADVWSCGVILYVLMAGYLPFEEADLPTLYRRINAAEFVCPFWFSADTKSFIQKILDPNPKTRVKIEEIRKEPWFKKNYFPVKLGEDEQVNLDDVRAVFDDIEDQYVAERSEITEGGPLIMNAFEMIALSQGLNLSPLFDRLQDNVKRQTRFVSRKPAKVIISSIEAVAESMGLKVHSRNYKVRLEGVSANRVGPFAVVLEVFEVAPSLFMVDVRRATGDTFDYHKFYMNFCAKLGNIIWRPAGTMPNSNLLKQMTL*

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