Glyma13g23400 - SoyBase

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Report for Sequence Feature Glyma13g23400

Feature Type:	gene_model
Chromosome:	Gm13
Start:	26803657
stop:	26805630
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g23400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23740	AT	Annotation by Michelle Graham. TAIR10: ribosomal protein S11-beta \| chr5:8008251-8009330 REVERSE LENGTH=159	SoyBase	E_val: 5.00E-95	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022627	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG1728	KOG	40S ribosomal protein S11	JGI		ISS
PTHR10744	Panther	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	JGI		ISS
PF00366	PFAM	Ribosomal protein S17	JGI		ISS
UniRef100_P17093	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S11 n=2 Tax=Glycine max RepID=RS11_SOYBN	SoyBase	E_val: 3.00E-112	ISS
UniRef100_P17093	UniRef	Annotation by Michelle Graham. Best UniRef hit: 40S ribosomal protein S11 n=2 Tax=Glycine max RepID=RS11_SOYBN	SoyBase	E_val: 3.00E-112	ISS

Expression Patterns of Glyma13g23400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g23400

Paralog	Evidence	Comments
Glyma17g11430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g23400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g165200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g23400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g23400

Limit To All Plant Sequences

>Glyma13g23400.2   sequence type=transcript   gene model=Glyma13g23400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAGCCCAGTAGCTGAAATCTTAACAAAAGGAGCGTCTTCCCTCAACTCCGAGCGAGAGAAGTTATTAGGGTTTTTGAGTGCGGCGGTCCAAACACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAGCACAAAGAAGACTGGGAAGGGAAAGAGACCTGGAAAAGGTGGGAACCGCTTTTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTATTATTGTTAGAAGGAATTATCTCCATTTTATCAAGAAGTACCAGAGGTATTCTCCTGCCATCCTTTTTAGCCTTTTTTTTTGTTTGGTATGTTTGTAGAAACATAATTACAATTCCATTTTTATTTTTTTG

Coding sequences of Glyma13g23400

Limit To All Plant Sequences

>Glyma13g23400.1   sequence type=CDS   gene model=Glyma13g23400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAACAAACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAGCACAAAGAAGACTGGGAAGGGAAAGAGACCTGGAAAAGGTGGGAACCGCTTTTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTATTATTGTTAGAAGGAATTATCTCCATTTTATCAAGAAGTACCAGAGGTACGAGAAGAGGCACTCAAATATTCCTGCTCATATATCACCTGCCTTCCGTGTGAAGGAAGGGGATCACGTTATTATTGGTCAATGCAGGCCTCTCTCTAAGACAGTGAGGTTCAATGTCTTGAAAGTGATCCCAGCTGGATCTTCTAGTGGTGCAAAGAAGGCTTTTACTGGAATGTGA

>Glyma13g23400.2   sequence type=CDS   gene model=Glyma13g23400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAACAAACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAGCACAAAGAAGACTGGGAAGGGAAAGAGACCTGGAAAAGGTGGGAACCGCTTTTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTATTATTGTTAGAAGGAATTATCTCCATTTTATCAAGAAGTACCAGAGGTATTCTCCTGCCATCCTTTTTAGCCTTTTTTTTTGTTTGGTATGTTTGTAG

Predicted protein sequences of Glyma13g23400

Limit To All Plant Sequences

>Glyma13g23400.1   sequence type=predicted peptide   gene model=Glyma13g23400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM*

>Glyma13g23400.2   sequence type=predicted peptide   gene model=Glyma13g23400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYSPAILFSLFFCLVCL*

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