Glyma13g23340 - SoyBase

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Report for Sequence Feature Glyma13g23340

Feature Type:	gene_model
Chromosome:	Gm13
Start:	26758919
stop:	26759795
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g23340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11090	AT	Annotation by Michelle Graham. TAIR10: serine-rich protein-related \| chr5:3524796-3525449 FORWARD LENGTH=217	SoyBase	E_val: 5.00E-16	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_E5GCC5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine-rich protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCC5_CUCME	SoyBase	E_val: 7.00E-13	ISS
UniRef100_I1LZV7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZV7_SOYBN	SoyBase	E_val: 9.00E-71	ISS

Expression Patterns of Glyma13g23340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g23340

Paralog	Evidence	Comments
Glyma17g11490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g23340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g164600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g23340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g23340

Limit To All Plant Sequences

>Glyma13g23340.1   sequence type=CDS   gene model=Glyma13g23340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCTACAAAATGTGTTTTGACAACAATGAAGTCCCAATCATCACGCACGTGCATGTGCTCACCCACGAATCACCCTGGCTCGTTCCGGTGCAGCATGCACAAGAAGCCACCCCGAGCGGTGGTGGCTCGACCCTTGTCTCGGACACCCTCCAGCTGGAACTCATCATCTATGGCTGCCAAAGCCAATTCATTGAAGGCCATTCTCTTGCAAATGATTAAGCCCTCTAGCCATGAGCATCACAGGAGAAAGAGTTTCCAACCAAAGCCTAGTCGCTTTTCTTTGATGAACAACGATAACGCTGCTGTTGTTGCTGTACGTTAA

Predicted protein sequences of Glyma13g23340

Limit To All Plant Sequences

>Glyma13g23340.1   sequence type=predicted peptide   gene model=Glyma13g23340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTKCVLTTMKSQSSRTCMCSPTNHPGSFRCSMHKKPPRAVVARPLSRTPSSWNSSSMAAKANSLKAILLQMIKPSSHEHHRRKSFQPKPSRFSLMNNDNAAVVAVR*

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