SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G32060 | AT | Annotation by Michelle Graham. TAIR10: calcium-binding EF hand family protein | chr4:15501134-15503321 FORWARD LENGTH=498 | SoyBase | E_val: 5.00E-176 | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| KOG2643 | KOG | Ca2+ binding protein, contains EF-hand motifs | JGI | ISS | |
| PTHR12294 | Panther | EF HAND DOMAIN FAMILY A1,A2-RELATED | JGI | ISS | |
| PTHR12294:SF1 | Panther | gb def: cg4704 gene product [drosophila melanogaster] | JGI | ISS | |
| PF00036 | PFAM | EF hand | JGI | ISS | |
| UniRef100_B9SZM7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calcium ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9SZM7_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D336 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D336 related cluster n=1 Tax=unknown RepID=UPI000233D336 | SoyBase | E_val: 0 | ISS |
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Glyma13g23280 not represented in the dataset |
Glyma13g23280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g163900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g23280.3 sequence type=transcript gene model=Glyma13g23280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTCGTACACACCACATCGTTGGTCAACCAATAACCACTGTTGTTCCCTTTCCAACGTTTTCTCTTTTGCATCCTCAATTTCCTCCTCCAACCTTTTTCAGCGACATAACATCATATTTCTACGTGCACTTATCTCTCTGTTTGTCAACTCTCTATAAATACTGTCTTGTGCTTGTTCTCCCACTTTCACATTAATATGAACTCAACTTTTACGATGTTTTCTTGGGGCAGAAGATTCCAACTCTCTCTACGGCATAGCATAAGGCCGTTTGGCAGCCAATCACAAGGCTCCACGTCATCATCATCTTCTTCTTCTTTCAGCTCCTTTGGTGGGTCCAGGCATGGTGACAATAGGGTCAGAGACTTTGAGGCCTTTCTTAGATCAATCACTTCTGGGGTTGTGGTTGTTAGCTCCACCTTAGGCTATTGGTATTGGTCATCTTTGTCTTCTCCTGGTGCCAATTCTCTTCAGTCATTTGCTGATGGTTATGCTAATGAAGAGGATCAGTTTCAACAAAACGATGAAAACAAACCCAAGTTCCTCTTTAATGATGGCTATAGAAGAAGAGTATTCTTCAATTATGAAAAACGAATTCGCTTGCAGAGCCCCCCAGAAAAGGTTTTCGAGTACTTTGCATCTGTTCGAAGCCCTAGTGGTGAGATTTTTATGACACCTGCCGATTTGATGCGTGCCATTGTTCCTGTCTTTCCTCCTTCTGAGTCAAACCGTGTTAGAGAGGGTTTTCTAAGAGGGGAGCAGGTTCCTGGCGAGTTGCAGTGCGAACCTTCACAATTTTTTATGCTTTTTGACACTAACAATGATGGACTCATTTCCTTTGCAGAGGAAATAGACATACAAGAATTCAAGAAAGTGATGGCCTTGATGAGATCACAAAACAGACAAGGAGCTAATCACAGAAATGGACGACGCCTTGGCGTTACAGCTTCTATAGAAAATGGGGGTCTCGTGGAGTATTTTTTTGGCAAAGATGGAAATACATGCTTACAACATGAAAGATTTGTTCAATTCTTAAGACAGCTGCATGATGAGATCTTGAGGTTAGAATTTTCCCATTATGACTACAATAAAAAAGGAACAATTTCAGCCAGAGATTTTGCCCTGTCCTTGGTTGCATCTGCGGACATCAATCACATAAACAAACTATTGGATAGGGTCGAAGAATTAAACAGTGACCAGAACCTAAGACACATAAGAATTACATTCAAGGAGTTTCAAGATTTTGCAGAATTACGCAAGAAATTGAAATCCTTCTCTCTGGCCATATTCAGTTATGGAAAAGTTAATGGAGTATTGACAAAATCTGATTTTCAGAGAGCAGCATCACAAGTGTGTGGTGTTTGCATTACAGATGAAGTGGTTGACATAATCTTTCATGTGTTTGATGCAAATCGTGACGGAAGCTTAAGTGCAGCCGAGTTTGTGAGAGTTGTACAAAGAAGGGAAAGCAACAATTCATCACGTCATGACAGCTTCGGGGGTTTAACATCCTGTTGGTTGAACTGTGTAAAAAACTGTTCATCAGCTCAGTTCAATTTTGATGGAATACGTTCATAAGTATCCATCTTTTTACTGTAATGAATTCAACCATATACAACATCATTTAGGGAAACAGGCAGAAGATTCATTCCCGTAGCAGTGGAGATTTGTTGTCTAATATTTTGGTGGCCAAGTCTTCATGTGTGAATATTTGTACATACTCACACTCCAGCTACCTTAAATATTAATTCTTGCCTTTCGTAGCTTTAGTTTTTATTTGGCCATCTTACACGGTGTTGATACTTTATTTTTATTCAAGTGTTAAATACTTGTAATATGAGTTTATACTAAGTGAGTAGATTAAGTATGAGAAATTTAATTATATCGCTCTTTCTACATTTTTTTTCTCCCTAGGTGAATGTCAGTGTGTAAAATGTAAATTCATTGGACCTTTCATTTCAACAGGGGGGGCAGCACTTGCTTTTAC
>Glyma13g23280.2 sequence type=CDS gene model=Glyma13g23280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACTCAACTTTTACGATGTTTTCTTGGGGCAGAAGATTCCAACTCTCTCTACGGCATAGCATAAGGCCGTTTGGCAGCCAATCACAAGGCTCCACGTCATCATCATCTTCTTCTTCTTTCAGCTCCTTTGGTGGGTCCAGGCATGGTGACAATAGGGTCAGAGACTTTGAGGCCTTTCTTAGATCAATCACTTCTGGGGTTGTGGTTGTTAGCTCCACCTTAGGCTATTGGTATTGGTCATCTTTGTCTTCTCCTGGTGCCAATTCTCTTCAGTCATTTGCTGATGGTTATGCTAATGAAGAGGATCAGTTTCAACAAAACGATGAAAACAAACCCAAGTTCCTCTTTAATGATGGCTATAGAAGAAGAGTATTCTTCAATTATGAAAAACGAATTCGCTTGCAGAGCCCCCCAGAAAAGGTTTTCGAGTACTTTGCATCTGTTCGAAGCCCTAGTGGTGAGATTTTTATGACACCTGCCGATTTGATGCGTGCCATTGTTCCTGTCTTTCCTCCTTCTGAGTCAAACCGTGTTAGAGAGGGTTTTCTAAGAGGGGAGCAGGTTCCTGGCGAGTTGCAGTGCGAACCTTCACAATTTTTTATGCTTTTTGACACTAACAATGATGGACTCATTTCCTTTGCAGAGTACATCTTTTTTGTTACTCTCCTCAGTATACCAGAGTCCAGTGTTTCAGTGGCTTTTAAAATGTTTGATATTGACAACAATGGGGAAATAGACATACAAGAATTCAAGAAAGTGATGGCCTTGATGAGATCACAAAACAGACAAGGAGCTAATCACAGAAATGGACGACGCCTTGGCGTTACAGCTTCTATAGAAAATGGGGGTCTCGTGGAGTATTTTTTTGGCAAAGATGGAAATACATGCTTACAACATGAAAGATTTGTTCAATTCTTAAGACAGCTGCATGATGAGATCTTGAGGTTAGAATTTTCCCATTATGACTACAATAAAAAAGGAACAATTTCAGCCAGAGATTTTGCCCTGTCCTTGGTTGCATCTGCGGACATCAATCACATAAACAAACTATTGGATAGGGTCGAAGAATTAAACAGTGACCAGAACCTAAGACACATAAGAATTACATTCAAGGAGTTTCAAGATTTTGCAGAATTACGCAAGAAATTGAAATCCTTCTCTCTGGCCATATTCAGTTATGGAAAAGTTAATGGAGTATTGACAAAATCTGATTTTCAGAGAGCAGCATCACAAGTGTGTGGTGTTTGCATTACAGATGAAGTGGTTGACATAATCTTTCATGTGTTTGATGCAAATCGTGACGGAAGCTTAAGTGCAGCCGAGTTTGTGAGAGTTGTACAAAGAAGGGAAAGCAACAATTCATCACGTCATGACAGCTTCGGGGGTTTAACATCCTGTTGGTTGAACTGTGTAAAAAACTGTTCATCAGCTCAGTTCAATTTTGATGGAATACGTTCATAA >Glyma13g23280.3 sequence type=CDS gene model=Glyma13g23280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACTCAACTTTTACGATGTTTTCTTGGGGCAGAAGATTCCAACTCTCTCTACGGCATAGCATAAGGCCGTTTGGCAGCCAATCACAAGGCTCCACGTCATCATCATCTTCTTCTTCTTTCAGCTCCTTTGGTGGGTCCAGGCATGGTGACAATAGGGTCAGAGACTTTGAGGCCTTTCTTAGATCAATCACTTCTGGGGTTGTGGTTGTTAGCTCCACCTTAGGCTATTGGTATTGGTCATCTTTGTCTTCTCCTGGTGCCAATTCTCTTCAGTCATTTGCTGATGGTTATGCTAATGAAGAGGATCAGTTTCAACAAAACGATGAAAACAAACCCAAGTTCCTCTTTAATGATGGCTATAGAAGAAGAGTATTCTTCAATTATGAAAAACGAATTCGCTTGCAGAGCCCCCCAGAAAAGGTTTTCGAGTACTTTGCATCTGTTCGAAGCCCTAGTGGTGAGATTTTTATGACACCTGCCGATTTGATGCGTGCCATTGTTCCTGTCTTTCCTCCTTCTGAGTCAAACCGTGTTAGAGAGGGTTTTCTAAGAGGGGAGCAGGTTCCTGGCGAGTTGCAGTGCGAACCTTCACAATTTTTTATGCTTTTTGACACTAACAATGATGGACTCATTTCCTTTGCAGAGGAAATAGACATACAAGAATTCAAGAAAGTGATGGCCTTGATGAGATCACAAAACAGACAAGGAGCTAATCACAGAAATGGACGACGCCTTGGCGTTACAGCTTCTATAGAAAATGGGGGTCTCGTGGAGTATTTTTTTGGCAAAGATGGAAATACATGCTTACAACATGAAAGATTTGTTCAATTCTTAAGACAGCTGCATGATGAGATCTTGAGGTTAGAATTTTCCCATTATGACTACAATAAAAAAGGAACAATTTCAGCCAGAGATTTTGCCCTGTCCTTGGTTGCATCTGCGGACATCAATCACATAAACAAACTATTGGATAGGGTCGAAGAATTAAACAGTGACCAGAACCTAAGACACATAAGAATTACATTCAAGGAGTTTCAAGATTTTGCAGAATTACGCAAGAAATTGAAATCCTTCTCTCTGGCCATATTCAGTTATGGAAAAGTTAATGGAGTATTGACAAAATCTGATTTTCAGAGAGCAGCATCACAAGTGTGTGGTGTTTGCATTACAGATGAAGTGGTTGACATAATCTTTCATGTGTTTGATGCAAATCGTGACGGAAGCTTAAGTGCAGCCGAGTTTGTGAGAGTTGTACAAAGAAGGGAAAGCAACAATTCATCACGTCATGACAGCTTCGGGGGTTTAACATCCTGTTGGTTGAACTGTGTAAAAAACTGTTCATCAGCTCAGTTCAATTTTGATGGAATACGTTCATAA
>Glyma13g23280.2 sequence type=predicted peptide gene model=Glyma13g23280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNSTFTMFSWGRRFQLSLRHSIRPFGSQSQGSTSSSSSSSFSSFGGSRHGDNRVRDFEAFLRSITSGVVVVSSTLGYWYWSSLSSPGANSLQSFADGYANEEDQFQQNDENKPKFLFNDGYRRRVFFNYEKRIRLQSPPEKVFEYFASVRSPSGEIFMTPADLMRAIVPVFPPSESNRVREGFLRGEQVPGELQCEPSQFFMLFDTNNDGLISFAEYIFFVTLLSIPESSVSVAFKMFDIDNNGEIDIQEFKKVMALMRSQNRQGANHRNGRRLGVTASIENGGLVEYFFGKDGNTCLQHERFVQFLRQLHDEILRLEFSHYDYNKKGTISARDFALSLVASADINHINKLLDRVEELNSDQNLRHIRITFKEFQDFAELRKKLKSFSLAIFSYGKVNGVLTKSDFQRAASQVCGVCITDEVVDIIFHVFDANRDGSLSAAEFVRVVQRRESNNSSRHDSFGGLTSCWLNCVKNCSSAQFNFDGIRS* >Glyma13g23280.3 sequence type=predicted peptide gene model=Glyma13g23280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNSTFTMFSWGRRFQLSLRHSIRPFGSQSQGSTSSSSSSSFSSFGGSRHGDNRVRDFEAFLRSITSGVVVVSSTLGYWYWSSLSSPGANSLQSFADGYANEEDQFQQNDENKPKFLFNDGYRRRVFFNYEKRIRLQSPPEKVFEYFASVRSPSGEIFMTPADLMRAIVPVFPPSESNRVREGFLRGEQVPGELQCEPSQFFMLFDTNNDGLISFAEEIDIQEFKKVMALMRSQNRQGANHRNGRRLGVTASIENGGLVEYFFGKDGNTCLQHERFVQFLRQLHDEILRLEFSHYDYNKKGTISARDFALSLVASADINHINKLLDRVEELNSDQNLRHIRITFKEFQDFAELRKKLKSFSLAIFSYGKVNGVLTKSDFQRAASQVCGVCITDEVVDIIFHVFDANRDGSLSAAEFVRVVQRRESNNSSRHDSFGGLTSCWLNCVKNCSSAQFNFDGIRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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