Glyma13g23080 - SoyBase

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Report for Sequence Feature Glyma13g23080

Feature Type:	gene_model
Chromosome:	Gm13
Start:	26541338
stop:	26547110
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g23080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G33280	AT	Annotation by Michelle Graham. TAIR10: Voltage-gated chloride channel family protein \| chr5:12549280-12552305 FORWARD LENGTH=765	SoyBase	E_val: 0	ISS
GO:0006821	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloride transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005216	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ion channel activity	SoyBase	N/A	ISS
GO:0005247	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chloride transport	SoyBase	N/A	ISS
GO:0005253	GO-mf	Annotation by Michelle Graham. GO Molecular Function: anion channel activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0474	KOG	Cl- channel CLC-7 and related proteins (CLC superfamily)	JGI		ISS
PTHR11689	Panther	CHLORIDE CHANNEL	JGI		ISS
PTHR11689:SF11	Panther	CHLORIDE CHANNEL	JGI		ISS
PF00571	PFAM	CBS domain	JGI		ISS
PF00654	PFAM	Voltage gated chloride channel	JGI		ISS
UniRef100_B9N720	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cl-channel clc-7 n=1 Tax=Populus trichocarpa RepID=B9N720_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1LZS8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZS8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g23080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g23080 not represented in the dataset	Glyma13g23080 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g23080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g161800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g23080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g23080

Limit To All Plant Sequences

>Glyma13g23080.4   sequence type=transcript   gene model=Glyma13g23080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCCTAACCGTTCTCTCTCTCCTATGTTCTCCTCTCACTGACTGTCCCTGCCATGTCCACGAACTACTCAACCAATGGAGACTCCGAAACTCTCCTTCGTCGTCCTTTGTTGTCCTCCCAAAGATCCATTGTCAACTCCACGTCCCAGGTTGCTATTGTCGGCTCCAATGTCAGCCCAATTGAGAGCCTCGACTACGAGATTTTCGAGAACGAGTTCTTCAAGCATGATTGGAGGAGCAGAGGGAAGGCTCAGATATTTCAGTTCATGATTATGAAGTGGCTCTTGTGCCTTCTAATTGGCATGATCGTTTGCCTTGTTGGCTTCTGCAACAATCTCGCGGTTGAGAATCTCGCTGGCATCAAGTTTGTGGTCACGTCCAACATGATGTTGGAGAGAAGGTTTCTGATGGCCTTTTTAGTATTTTTTGTTTCAAATTTGGTTCTCACGGTTTTTGCGTGCACAATCACGGCTTTGATAGCACCTACTGCCACCGGTTCAGGTATACCCGAGGTGAAAGCTTACCTGAATGGTGTGGATGCACCTGGAATATTTACTGTACGAACTCTTCTTGTTAAGATTATTGGAAGTATTACAGCAGTGTCATCATCGCTTCTTATTGGGAAGGCGGGGCCTATGGTGCATACAGGTGCATGTGTGGCTGCATTGTTAGGTCAGGGTGGGTCGAAGAGATATGGGTTAACATGGAAATGGTTAAAGTTTTTTAAGAATGACCGAGATCGGAGAGATTTAATAATATGTGGATCAGCAGCTGGAATTGCTGCTGCCTTCCGTGCCCCTGTTGGTGGCGTGTTGTTTGCTCTTGAAGGGATGTCATCTTGGTGGAGAAGTGCCCTTTTGTGGAGAGCTTTCTTCACAGCAGCAATAGTTGCAATTTTGCTTCGTGCCCTGATTGATTTATGTTTAAGTGGTAAATGTGGGTTATTTGGTAAAGGGGGACTGATAATGTTCGATGCTTATTCAGCAAGTATTTCATATCATTTGGTGGATGTTCCTCCTGTGTTTGTTCTTGGTGTTATAGGGGGAATACTTGGCAGCTTATTTAATTTGATTTTGAGTAAAGTTCTTCGCATATACAATTTTATCAATGAGAAAGGCACCATTTTCAAAATTTTGCTTGCCTGTTTAATCTCCATTTTTACATCCTGTCTTCTTTTTGGATTGCCATGGTTAACATCTTGCCGACCTTGTCCGCCTGATCCATCTGAGCCTTGTCCTACAATAGGTCGGTCTGGTATCTACAAGAAATTCCAGTGCCCACCTAATCACTACAATGATCTTGCCAGCCTCATTTTCAACACAAATGATGACGCTATTAGAAATCTATTTAGCAAGAATACCGACGATGAGTTTGAGTTTAAATCAGTGTTCATCTTTTTCATCACTTGCTTTTCTTTAAGTATCTTTAGCTATGGAGTTGTTGCTCCAGCTGGTCTTTTTGTGCCAGTTATTGTGACTGGTGCATCTTATGGGCGTATTGTTGGAATGTTGCTTGGCAAAAAGGACAGTCTTAGCCATGGTCTTTATGCTGTACTTGGTGCTGCTTCCTTTCTCGGTGGCTCCATGAGGACAACAGTTTCTTTGTGTGTAATTATTCTAGAACTGACCAATAACCTGTTATTGCTACCCCTAATCATGATGGTGCTGTTCATTTCTAAGACTGTAGCAGATGCTTTCAATGCAAATATATATGACATTATAATGAAAGCCAAGGGTTTGCCTTATTTAGAAACTCATGCTGAACCATATATGAGGCAGCTATCAGTAGGCGATGTAGTCACAGGCCCACTTCAGACATTTAATGGGGTTGAGAAGGTTTGCAACATAGTGTTTATTCTCAGAACTACGGGACATAATGGGTTTCCCGTTATAGACGAGCCTCCTATTTCGCAAGCTCCAGTTTTATTTGGCATAATCCTCCGTGACCATCTTCTCACATTGTTGAAGAAGAAAGCTTTTATGTCCTCACCTATGGCAACAAGTGGTGATGTCATCAATGAGTTTTCAGCAGATGATTTTGCAAAGAAGGGTTCAAGCAAAGGTCGTCTAAAGATAGAGGATATACAGTTATCAGAGGAAGAGATGGACATGTTCATAGATCTACATCCATTTACTAATGCTTCTCCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACACTTTTCCGAGAGCTAGGTTTAAGGCATCTGCTAGTGGTACCCAAGTTCTCCGGTAGATCACCTGTGGTGGGTATACTCACACGACACGATTTCATGTCAGAACATATATTGGGTTTGCATCCCTTTCTGGTAAGAAACACAGGGAAAAGTTTAAGATTTTAACACCCTTGGCTAGGGAAAAATAAATTTGGGCATTTGAGCAACGCTTACATATTCTTGCGTTGCAGAAGGATTTCTTATTCATGAGACCAGATTACCAGTGATGGTTTTTTTTTTTTTTTGTACACTTCATGGAAGCCAGAGCTCTAAGTCATATTACAAAAATCAAAGAATGATTCAATGAGCCCTTTATCAATTATTGGTCTTTGTTGCACTTTGACGAAAGTATGGTACTTGATAGAACATTATGGCGGAAGTTGATTCATGTAGCCGACCCCACCTAGTGGGATAAGGCGTTGTTGTTGTTGTTGTTGTTGTTGCACTTTGACGAAAGCATGAGGCTGCATGAAAGGATGATGGCCTCTAATCATGGGGATTTCGTTTTACTTTAATTGATTGCATTATACTTTCTGTCATAAATCATAATGATTGATCAATGGTTGGTTGAAGCAGGTTGAAGGTGCTTCGCTTCTCGTTTGTAGAAATAGGGTAAAGTTTCTGTATATTCAGTTTTTCATGGATATGTTCAGGAGTAAAATTTTAGTCGGAAAAATAAGAAAAGGTACATTTTATTTTGAAATTAGGAGTCATATAATATGTAAAAAAATAATAATAATAAAGGATTGGGACATTATGCTCATC

Coding sequences of Glyma13g23080

Limit To All Plant Sequences

>Glyma13g23080.3   sequence type=CDS   gene model=Glyma13g23080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCACGAACTACTCAACCAATGGAGACTCCGAAACTCTCCTTCGTCGTCCTTTGTTGTCCTCCCAAAGATCCATTGTCAACTCCACGTCCCAGGTTGCTATTGTCGGCTCCAATGTCAGCCCAATTGAGAGCCTCGACTACGAGATTTTCGAGAACGAGTTCTTCAAGCATGATTGGAGGAGCAGAGGGAAGGCTCAGATATTTCAGTTCATGATTATGAAGTGGCTCTTGTGCCTTCTAATTGGCATGATCGTTTGCCTTGTTGGCTTCTGCAACAATCTCGCGGTTGAGAATCTCGCTGGCATCAAGTTTGTGGTCACGTCCAACATGATGTTGGAGAGAAGGTTTCTGATGGCCTTTTTAGTATTTTTTGTTTCAAATTTGGTTCTCACGGTTTTTGCGTGCACAATCACGGCTTTGATAGCACCTACTGCCACCGGTTCAGGTATACCCGAGGTGAAAGCTTACCTGAATGGTGTGGATGCACCTGGAATATTTACTGTACGAACTCTTCTTGTTAAGATTATTGGAAGTATTACAGCAGTGTCATCATCGCTTCTTATTGGGAAGGCGGGGCCTATGGTGCATACAGGTGCATGTGTGGCTGCATTGTTAGGTCAGGGTGGGTCGAAGAGATATGGGTTAACATGGAAATGGTTAAAGTTTTTTAAGAATGACCGAGATCGGAGAGATTTAATAATATGTGGATCAGCAGCTGGAATTGCTGCTGCCTTCCGTGCCCCTGTTGGTGGCGTGTTGTTTGCTCTTGAAGGGATGTCATCTTGGTGGAGAAGTGCCCTTTTGTGGAGAGCTTTCTTCACAGCAGCAATAGTTGCAATTTTGCTTCGTGCCCTGATTGATTTATGTTTAAGTGGTAAATGTGGGTTATTTGGTAAAGGGGGACTGATAATGTTCGATGCTTATTCAGCAAGTATTTCATATCATTTGGTGGATGTTCCTCCTGTGTTTGTTCTTGGTGTTATAGGGGGAATACTTGGCAGCTTATTTAATTTGATTTTGAGTAAAGTTCTTCGCATATACAATTTTATCAATGAGAAAGGCACCATTTTCAAAATTTTGCTTGCCTGTTTAATCTCCATTTTTACATCCTGTCTTCTTTTTGGATTGCCATGGTTAACATCTTGCCGACCTTGTCCGCCTGATCCATCTGAGCCTTGTCCTACAATAGGTCGGTCTGGTATCTACAAGAAATTCCAGTGCCCACCTAATCACTACAATGATCTTGCCAGCCTCATTTTCAACACAAATGATGACGCTATTAGAAATCTATTTAGCAAGAATACCGACGATGAGTTTGAGTTTAAATCAGTGTTCATCTTTTTCATCACTTGCTTTTCTTTAAGTATCTTTAGCTATGGAGTTGTTGCTCCAGCTGGTCTTTTTGTGCCAGTTATTGTGACTGGTGCATCTTATGGGCGTATTGTTGGAATGTTGCTTGGCAAAAAGGACAGTCTTAGCCATGGTCTTTATGCTGTACTTGGTGCTGCTTCCTTTCTCGGTGGCTCCATGAGGACAACAGTTTCTTTGTGTGTAATTATTCTAGAACTGACCAATAACCTGTTATTGCTACCCCTAATCATGATGGTGCTGTTCATTTCTAAGACTGTAGCAGATGCTTTCAATGCAAATATATATGACATTATAATGAAAGCCAAGGGTTTGCCTTATTTAGAAACTCATGCTGAACCATATATGAGGCAGCTATCAGTAGGCGATGTAGTCACAGGCCCACTTCAGACATTTAATGGGGTTGAGAAGGTTTGCAACATAGTGTTTATTCTCAGAACTACGGGACATAATGGGTTTCCCGTTATAGACGAGCCTCCTATTTCGCAAGCTCCAGTTTTATTTGGCATAATCCTCCGTGACCATCTTCTCACATTGTTGAAGAAGAAAGCTTTTATGTCCTCACCTATGGCAACAAGTGGTGATGTCATCAATGAGTTTTCAGCAGATGATTTTGCAAAGAAGGGTTCAAGCAAAGGTCGTCTAAAGATAGAGGATATACAGTTATCAGAGGAAGAGATGGACATGTTCATAGATCTACATCCATTTACTAATGCTTCTCCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACACTTTTCCGAGAGCTAGGTTTAAGGCATCTGCTAGTGGTACCCAAGTTCTCCGGTAGATCACCTGTGGTGGGTATACTCACACGACACGATTTCATGTCAGAACATATATTGGGTTTGCATCCCTTTCTGGTAAGAAACACAGGGAAAAGTTTAAGATTTTAA

>Glyma13g23080.4   sequence type=CDS   gene model=Glyma13g23080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCACGAACTACTCAACCAATGGAGACTCCGAAACTCTCCTTCGTCGTCCTTTGTTGTCCTCCCAAAGATCCATTGTCAACTCCACGTCCCAGGTTGCTATTGTCGGCTCCAATGTCAGCCCAATTGAGAGCCTCGACTACGAGATTTTCGAGAACGAGTTCTTCAAGCATGATTGGAGGAGCAGAGGGAAGGCTCAGATATTTCAGTTCATGATTATGAAGTGGCTCTTGTGCCTTCTAATTGGCATGATCGTTTGCCTTGTTGGCTTCTGCAACAATCTCGCGGTTGAGAATCTCGCTGGCATCAAGTTTGTGGTCACGTCCAACATGATGTTGGAGAGAAGGTTTCTGATGGCCTTTTTAGTATTTTTTGTTTCAAATTTGGTTCTCACGGTTTTTGCGTGCACAATCACGGCTTTGATAGCACCTACTGCCACCGGTTCAGGTATACCCGAGGTGAAAGCTTACCTGAATGGTGTGGATGCACCTGGAATATTTACTGTACGAACTCTTCTTGTTAAGATTATTGGAAGTATTACAGCAGTGTCATCATCGCTTCTTATTGGGAAGGCGGGGCCTATGGTGCATACAGGTGCATGTGTGGCTGCATTGTTAGGTCAGGGTGGGTCGAAGAGATATGGGTTAACATGGAAATGGTTAAAGTTTTTTAAGAATGACCGAGATCGGAGAGATTTAATAATATGTGGATCAGCAGCTGGAATTGCTGCTGCCTTCCGTGCCCCTGTTGGTGGCGTGTTGTTTGCTCTTGAAGGGATGTCATCTTGGTGGAGAAGTGCCCTTTTGTGGAGAGCTTTCTTCACAGCAGCAATAGTTGCAATTTTGCTTCGTGCCCTGATTGATTTATGTTTAAGTGGTAAATGTGGGTTATTTGGTAAAGGGGGACTGATAATGTTCGATGCTTATTCAGCAAGTATTTCATATCATTTGGTGGATGTTCCTCCTGTGTTTGTTCTTGGTGTTATAGGGGGAATACTTGGCAGCTTATTTAATTTGATTTTGAGTAAAGTTCTTCGCATATACAATTTTATCAATGAGAAAGGCACCATTTTCAAAATTTTGCTTGCCTGTTTAATCTCCATTTTTACATCCTGTCTTCTTTTTGGATTGCCATGGTTAACATCTTGCCGACCTTGTCCGCCTGATCCATCTGAGCCTTGTCCTACAATAGGTCGGTCTGGTATCTACAAGAAATTCCAGTGCCCACCTAATCACTACAATGATCTTGCCAGCCTCATTTTCAACACAAATGATGACGCTATTAGAAATCTATTTAGCAAGAATACCGACGATGAGTTTGAGTTTAAATCAGTGTTCATCTTTTTCATCACTTGCTTTTCTTTAAGTATCTTTAGCTATGGAGTTGTTGCTCCAGCTGGTCTTTTTGTGCCAGTTATTGTGACTGGTGCATCTTATGGGCGTATTGTTGGAATGTTGCTTGGCAAAAAGGACAGTCTTAGCCATGGTCTTTATGCTGTACTTGGTGCTGCTTCCTTTCTCGGTGGCTCCATGAGGACAACAGTTTCTTTGTGTGTAATTATTCTAGAACTGACCAATAACCTGTTATTGCTACCCCTAATCATGATGGTGCTGTTCATTTCTAAGACTGTAGCAGATGCTTTCAATGCAAATATATATGACATTATAATGAAAGCCAAGGGTTTGCCTTATTTAGAAACTCATGCTGAACCATATATGAGGCAGCTATCAGTAGGCGATGTAGTCACAGGCCCACTTCAGACATTTAATGGGGTTGAGAAGGTTTGCAACATAGTGTTTATTCTCAGAACTACGGGACATAATGGGTTTCCCGTTATAGACGAGCCTCCTATTTCGCAAGCTCCAGTTTTATTTGGCATAATCCTCCGTGACCATCTTCTCACATTGTTGAAGAAGAAAGCTTTTATGTCCTCACCTATGGCAACAAGTGGTGATGTCATCAATGAGTTTTCAGCAGATGATTTTGCAAAGAAGGGTTCAAGCAAAGGTCGTCTAAAGATAGAGGATATACAGTTATCAGAGGAAGAGATGGACATGTTCATAGATCTACATCCATTTACTAATGCTTCTCCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACACTTTTCCGAGAGCTAGGTTTAAGGCATCTGCTAGTGGTACCCAAGTTCTCCGGTAGATCACCTGTGGTGGGTATACTCACACGACACGATTTCATGTCAGAACATATATTGGGTTTGCATCCCTTTCTGGTAAGAAACACAGGGAAAAGTTTAAGATTTTAA

Predicted protein sequences of Glyma13g23080

Limit To All Plant Sequences

>Glyma13g23080.3   sequence type=predicted peptide   gene model=Glyma13g23080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTNYSTNGDSETLLRRPLLSSQRSIVNSTSQVAIVGSNVSPIESLDYEIFENEFFKHDWRSRGKAQIFQFMIMKWLLCLLIGMIVCLVGFCNNLAVENLAGIKFVVTSNMMLERRFLMAFLVFFVSNLVLTVFACTITALIAPTATGSGIPEVKAYLNGVDAPGIFTVRTLLVKIIGSITAVSSSLLIGKAGPMVHTGACVAALLGQGGSKRYGLTWKWLKFFKNDRDRRDLIICGSAAGIAAAFRAPVGGVLFALEGMSSWWRSALLWRAFFTAAIVAILLRALIDLCLSGKCGLFGKGGLIMFDAYSASISYHLVDVPPVFVLGVIGGILGSLFNLILSKVLRIYNFINEKGTIFKILLACLISIFTSCLLFGLPWLTSCRPCPPDPSEPCPTIGRSGIYKKFQCPPNHYNDLASLIFNTNDDAIRNLFSKNTDDEFEFKSVFIFFITCFSLSIFSYGVVAPAGLFVPVIVTGASYGRIVGMLLGKKDSLSHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLFISKTVADAFNANIYDIIMKAKGLPYLETHAEPYMRQLSVGDVVTGPLQTFNGVEKVCNIVFILRTTGHNGFPVIDEPPISQAPVLFGIILRDHLLTLLKKKAFMSSPMATSGDVINEFSADDFAKKGSSKGRLKIEDIQLSEEEMDMFIDLHPFTNASPYTVVETMSLGKALTLFRELGLRHLLVVPKFSGRSPVVGILTRHDFMSEHILGLHPFLVRNTGKSLRF*

>Glyma13g23080.4   sequence type=predicted peptide   gene model=Glyma13g23080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTNYSTNGDSETLLRRPLLSSQRSIVNSTSQVAIVGSNVSPIESLDYEIFENEFFKHDWRSRGKAQIFQFMIMKWLLCLLIGMIVCLVGFCNNLAVENLAGIKFVVTSNMMLERRFLMAFLVFFVSNLVLTVFACTITALIAPTATGSGIPEVKAYLNGVDAPGIFTVRTLLVKIIGSITAVSSSLLIGKAGPMVHTGACVAALLGQGGSKRYGLTWKWLKFFKNDRDRRDLIICGSAAGIAAAFRAPVGGVLFALEGMSSWWRSALLWRAFFTAAIVAILLRALIDLCLSGKCGLFGKGGLIMFDAYSASISYHLVDVPPVFVLGVIGGILGSLFNLILSKVLRIYNFINEKGTIFKILLACLISIFTSCLLFGLPWLTSCRPCPPDPSEPCPTIGRSGIYKKFQCPPNHYNDLASLIFNTNDDAIRNLFSKNTDDEFEFKSVFIFFITCFSLSIFSYGVVAPAGLFVPVIVTGASYGRIVGMLLGKKDSLSHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLFISKTVADAFNANIYDIIMKAKGLPYLETHAEPYMRQLSVGDVVTGPLQTFNGVEKVCNIVFILRTTGHNGFPVIDEPPISQAPVLFGIILRDHLLTLLKKKAFMSSPMATSGDVINEFSADDFAKKGSSKGRLKIEDIQLSEEEMDMFIDLHPFTNASPYTVVETMSLGKALTLFRELGLRHLLVVPKFSGRSPVVGILTRHDFMSEHILGLHPFLVRNTGKSLRF*

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