SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G20270 | AT | Annotation by Michelle Graham. TAIR10: heptahelical transmembrane protein1 | chr5:6841025-6842656 REVERSE LENGTH=332 | SoyBase | E_val: 1.00E-130 | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009725 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hormone stimulus | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| KOG0748 | KOG | Predicted membrane proteins, contain hemolysin III domain | JGI | ISS | |
| PTHR20855 | Panther | ADIPOR/PROGESTIN RECEPTOR-RELATED | JGI | ISS | |
| PTHR20855:SF14 | Panther | ADIPONECTIN RECEPTOR-RELATED | JGI | ISS | |
| PF03006 | PFAM | Haemolysin-III related | JGI | ISS | |
| UniRef100_G7JFE9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Adiponectin receptor protein n=1 Tax=Medicago truncatula RepID=G7JFE9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LZS3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZS3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g23050 not represented in the dataset |
Glyma13g23050 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g11830 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g161500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g23050.1 sequence type=CDS gene model=Glyma13g23050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACTATATTCAGACCAAATGCGTGGTCAAGCGCAAAGGCAAAGAAACCGGTGAAAGTGAAACCTTGTGTTTTACAAAGTCCAAGGATAACAACAATAACAACATGTGCGACCGCCACTGCGGAAAACGCTACCCTCTGTTGTCGTTTTGGGAGCTGCCGGAATTCATGAAGGACAACGAATACATTCTTCGTTATTACAGAGCCAATTGGCCTTTCAAGCAAGCTCTCTTTAGCCTCTTTCGTTGGCATAACGAAACCTTAAATGTTTGGACGCATTTAATTGGGTTTTTACTCTTTCTCGGATTGACCCTCGCGAATTTGATGAAGCCTAAAGTGGTGAATCTCTTGGAACTCTTTACCAGGTCTTTTTCTTCAAGTGCGGAAAAAAATGTTTCTCATAACATCAAAGATTTGTTTCTGGGAACAACATTACTCTTTGATTTAAATCATCAAATACCTTTGACAATCGAACTTGAATCCACAGCACTGGTTATAGCAAGATGGCCATTCTTTGTTTTCCTAGGAGGCTCTATGTTCTGCCTCCTCTCTAGCAGCATGTGCCACCTCTTTTGTTGTCACTCCCGCGACTTGAACCTGTTCCTGTGGCGAATGGACTATGTAGGAATAGTTGTCATGATCATCACCTCCTTTTTCCCTCAAATCTACTATGTCTTCCTATGTGAACCTCACTGGCAAATCATCTACCTTGCTGGGATTACAGCCATGGGACTATTCACCATCGCAACGATGCTCTCTCCAACACTTTCCACTAGCAAATACCGCACATTTCGGGCCATGTTGTTCTGTTCAATGGGACTTTTCGGCATTGTGCCTGCAATCCATGCATGCTTTGTGAATTGGAGCAATCCTAGACGCAACATTACCTTAGCATATGAAATTGGCATGGCCTTATCATACTTGACAGGGACCTTTTTCTATGTGACAAGGATACCCGAAAGGTGGAAGCCAGGGTGGTTCGATTTGGCAGGTCATAGCCATCAAATATTTCATGCTCTTGTTGTTGTTGGGGCATTGGCACATTATGCAGCCACTCTTCAAATGCTAGAGTGGCGTGACTCTTTTGGCTGTGACACGGTTCCATAA
>Glyma13g23050.1 sequence type=predicted peptide gene model=Glyma13g23050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNYIQTKCVVKRKGKETGESETLCFTKSKDNNNNNMCDRHCGKRYPLLSFWELPEFMKDNEYILRYYRANWPFKQALFSLFRWHNETLNVWTHLIGFLLFLGLTLANLMKPKVVNLLELFTRSFSSSAEKNVSHNIKDLFLGTTLLFDLNHQIPLTIELESTALVIARWPFFVFLGGSMFCLLSSSMCHLFCCHSRDLNLFLWRMDYVGIVVMIITSFFPQIYYVFLCEPHWQIIYLAGITAMGLFTIATMLSPTLSTSKYRTFRAMLFCSMGLFGIVPAIHACFVNWSNPRRNITLAYEIGMALSYLTGTFFYVTRIPERWKPGWFDLAGHSHQIFHALVVVGALAHYAATLQMLEWRDSFGCDTVP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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