Glyma13g23031 - SoyBase

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Report for Sequence Feature Glyma13g23031

Feature Type:	gene_model
Chromosome:	Gm13
Start:	26496147
stop:	26497461
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g23031

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G42180	AT	Annotation by Michelle Graham. TAIR10: Exostosin family protein \| chr3:14324300-14328644 REVERSE LENGTH=470	SoyBase	E_val: 4.00E-64	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PTHR11062	Panther	EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED	JGI		ISS
PTHR11062:SF1	Panther	EXOSTOSIN RELATED	JGI		ISS
PF03016	PFAM	Exostosin family	JGI		ISS
UniRef100_G7JFE4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Xylogalacturonan beta-1,3-xylosyltransferase n=1 Tax=Medicago truncatula RepID=G7JFE4_MEDTR	SoyBase	E_val: 5.00E-91	ISS
UniRef100_UPI000233D1E2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D1E2 related cluster n=1 Tax=unknown RepID=UPI000233D1E2	SoyBase	E_val: 2.00E-125	ISS

Expression Patterns of Glyma13g23031

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g23031 not represented in the dataset	Glyma13g23031 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g23031 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g161300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g23031

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g23031

Limit To All Plant Sequences

>Glyma13g23031.1   sequence type=CDS   gene model=Glyma13g23031   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAACAAGAGCCCATTCAAGGCTACCCATCCTGAACAGGCCCATCTATTCTTACTACCCTTCAGTGTATCTAAGGTCATTCGCTATGTATACAAGCCCAGAAGGTCCAGATCCGATTATGATCCTGATCGCTTACAACGCTTGGTGCTGGATTATATCAACATTGTTGCAAATAGATATCCTAATTGGAACAGAAGCAGAGATGCTAATCCTGAAGTCTTCAAGTACTTCATCAGGGCACTTTGCAATGCCAACACTTCAGAAGGATTCCAGCCCAGCAGAGACGTGTCCATTACTGAAGTGTATTTGCCTTCTAGAAAGCTTGGCCCACCGAATACGGCCCAACACCCTAATAACCGCACAATATTATTAGTCTTTTTTGCTGGAAAAACAAAGATAAAGAAGTGCAAGTTCACGATGCAAGTGGCAAGTCCTAGGGTGGTGGAAGCAATCTATGTGGGTGATGTGGTTAAAAGGAGTAAATTCATTGCAGTTGAAAGAATACCCGAAACTAAGACTATTTTACAAAATGTTTCAAAAGATAAGTACATGGAGTTGTATTCAAATGTAAAGAGGGTTCGAAGGCATTTTGTGATCAATAGGCCAGCAAAGCCATTTGATTTGATACATATGATTCTTCACTCACTTCGCAATAAGAGGATTGTTTGCGCATAA

Predicted protein sequences of Glyma13g23031

Limit To All Plant Sequences

>Glyma13g23031.1   sequence type=predicted peptide   gene model=Glyma13g23031   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANKSPFKATHPEQAHLFLLPFSVSKVIRYVYKPRRSRSDYDPDRLQRLVLDYINIVANRYPNWNRSRDANPEVFKYFIRALCNANTSEGFQPSRDVSITEVYLPSRKLGPPNTAQHPNNRTILLVFFAGKTKIKKCKFTMQVASPRVVEAIYVGDVVKRSKFIAVERIPETKTILQNVSKDKYMELYSNVKRVRRHFVINRPAKPFDLIHMILHSLRNKRIVCA*

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