Glyma13g22970 - SoyBase

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Report for Sequence Feature Glyma13g22970

Feature Type:	gene_model
Chromosome:	Gm13
Start:	26440826
stop:	26446371
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g22970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G35200	AT	Annotation by Michelle Graham. TAIR10: ENTH/ANTH/VHS superfamily protein \| chr5:13462463-13465581 REVERSE LENGTH=544	SoyBase	E_val: 0	ISS
GO:0048268	GO-bp	Annotation by Michelle Graham. GO Biological Process: clathrin coat assembly	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0030118	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: clathrin coat	SoyBase	N/A	ISS
GO:0005543	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid binding	SoyBase	N/A	ISS
GO:0005545	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1-phosphatidylinositol binding	SoyBase	N/A	ISS
GO:0030276	GO-mf	Annotation by Michelle Graham. GO Molecular Function: clathrin binding	SoyBase	N/A	ISS
KOG0251	KOG	Clathrin assembly protein AP180 and related proteins, contain ENTH domain	JGI		ISS
PTHR22951	Panther	CLATHRIN ASSEMBLY PROTEIN	JGI		ISS
PTHR22951:SF1	Panther	CLATHRIN ASSEMBLY PROTEIN	JGI		ISS
PF07651	PFAM	ANTH domain	JGI		ISS
UniRef100_B9T128	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Clathrin assembly protein, putative n=1 Tax=Ricinus communis RepID=B9T128_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LZR5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZR5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g22970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g22970

Paralog	Evidence	Comments
Glyma17g11910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g22970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g160700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g22970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g22970

Limit To All Plant Sequences

>Glyma13g22970.1   sequence type=CDS   gene model=Glyma13g22970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGTGGCACGCAGAAGAGTCTGAGAAAAGCACTTGGAGCCCTTAAGGATACTACAACAGTCTCGTTGGCTAAGGTCAACAGTGATTACAAGGAATTGGACATTGCTATAGTTAGGGCCACAAATCATGTTGAACGTCCAGCTAAGGAAAAACATATAAGAGCTATATTTTCAGCTATCTCAGCTACAAGACCCAGGGCTGATGTTGCCTATTGCATCCACGCACTTGCCAGGCGGTTATCAAAGACACATAACTGGGCAGTTGCATTGAAAACTTTAATTGTCATTCACCGTGCTCTAAGGGAAGTTGATCCTACATTTCATGAAGAACTCATCAATTATGGGAGAAGCAGAAGTCATATGCTCAACATGGCTCATTTTAAAGATGATTCCAGTCCAAATGCATGGGATTATTCTGCATGGGTTCGCACTTATGCCTTATTTTTGGAGGAAAGGCTGGAATGTTTCCGTGTGTTGAAGTATGACATTGAGGCAGACCGTCCTAGGACCAAAGATTTGGATACTGCAGAACTGTTAGAGCAGTTGCCAACTTTACAGCAACTTCTCCATCGAGTTATTGATTGCCAGCCACACGGGGCAGCTGTAAATAACTTTGTCATTCAGTTAGCACTCTCAATGGTTGCTTCAGAAAGCATTAAAATTTATCAAGCTATTAGTGATGGAACAGTCAATATGGTTGATAAGTTTTTTGAGATGCAACGCCATGATGCTCTGAAAGCTCTTGATATATACAGGAGGGTTGGGCACCAGGCTGAGAGACTGTCAGAGTTTTATGAAATATGTCGTAATCTTGACATTGGACGTGGAGAGAAGTTTATTAAAGTTGAGCAGCCCCCTTCGTCATTTCTGCAAGCCATGGAAGAGTATGTCAAAGATGCTCCCCAGGGACCAATAGTTCGAAAGGATCAGGCTATTGAGAACAAAGAAGTTTTGGCTATTGAATACAAAAAGACAACAGAAGTGGAAGAGGAATGTCCACCCTCACCCTCACCCTCACCCCCTCCACCTCCACCTTCTGAACCTGTGAAAGTGGAAGCACCACCAGTACAACCACCTCCTGATCTGTTGAATTTGGAGGATCCTGTTCCAGCTGCTGCAGAGTTGGAAGAGAAGAATGCATTGGCTTTAGCCATTGTTCCCGTTGCTGTTGAACAACAACCTTCTGCTGTTTCAAATCAAGCAAATGGAACTACAGGATGGGAATTGGCCCTTGTTACTGCTCCTAGTTCAAATGAGAGTGCCACAACAGCTAGCAAACTGGCTGGAGGTTTGGACAAGCTTACACTAGACAGCCTATACGATGATGCCCTCAGGAGAAACAACCAAAATGTCAGCTATAATCCATGGGAGCCAGCACCAGGTGGAAACATGATGCAACCGACAATGCACGATCCGTTTTTTGCCTCAAATACAGTTGCCGCTCCACCTTCTGTTCAGATGGCTTCCATGTCCAACCAACAGCAAGCTTTCATGTATCAACAGCAGCAGCAAATGATGATGGCTCCCCAACAACAATCTGTAAATCCTTTTGGAAATCCTTATGGAGCCACTGCTGTCCATCCCTATGGCTCAGGTATGCCTGTTCAATCATACAATCCATATACAGGTCTCATCTAG

Predicted protein sequences of Glyma13g22970

Limit To All Plant Sequences

>Glyma13g22970.1   sequence type=predicted peptide   gene model=Glyma13g22970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGGTQKSLRKALGALKDTTTVSLAKVNSDYKELDIAIVRATNHVERPAKEKHIRAIFSAISATRPRADVAYCIHALARRLSKTHNWAVALKTLIVIHRALREVDPTFHEELINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRTYALFLEERLECFRVLKYDIEADRPRTKDLDTAELLEQLPTLQQLLHRVIDCQPHGAAVNNFVIQLALSMVASESIKIYQAISDGTVNMVDKFFEMQRHDALKALDIYRRVGHQAERLSEFYEICRNLDIGRGEKFIKVEQPPSSFLQAMEEYVKDAPQGPIVRKDQAIENKEVLAIEYKKTTEVEEECPPSPSPSPPPPPPSEPVKVEAPPVQPPPDLLNLEDPVPAAAELEEKNALALAIVPVAVEQQPSAVSNQANGTTGWELALVTAPSSNESATTASKLAGGLDKLTLDSLYDDALRRNNQNVSYNPWEPAPGGNMMQPTMHDPFFASNTVAAPPSVQMASMSNQQQAFMYQQQQQMMMAPQQQSVNPFGNPYGATAVHPYGSGMPVQSYNPYTGLI*

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