Glyma13g22870 - SoyBase

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Report for Sequence Feature Glyma13g22870

Feature Type:	gene_model
Chromosome:	Gm13
Start:	26364606
stop:	26370673
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g22870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G53270	AT	Annotation by Michelle Graham. TAIR10: Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein \| chr3:19750406-19752168 REVERSE LENGTH=280	SoyBase	E_val: 8.00E-95	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR15131	Panther	SMALL NUCLEAR RNA ACTIVATING COMPLEX, POLYPEPTIDE 1	JGI		ISS
PF09808	PFAM	Small nuclear RNA activating complex (SNAPc), subunit SNAP43	JGI		ISS
UniRef100_F4J9B1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein n=1 Tax=Arabidopsis thaliana RepID=F4J9B1_ARATH	SoyBase	E_val: 5.00E-90	ISS
UniRef100_I1LZQ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZQ7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g22870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g22870

Paralog	Evidence	Comments
Glyma17g11990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g22870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g159900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g22870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g22870

Limit To All Plant Sequences

>Glyma13g22870.4   sequence type=transcript   gene model=Glyma13g22870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAGTTCTTTGTGACATGTAAAACTGACTATTAACATTTGTAATCTAGGATCTTTAAAAACATAAATTTGACTTTTGTGTAAATTTTTTAATGAAATTTGACACTTATATTTTTAGAATTAATTTTAACTTTTATAGTCAGCCTCCTCTATCTTCTAGGTTTGGCTCAGTCCCTGGATGTGGTTCTCACGTTGGATCCACGCCACACAATACCACGTTATATTGATTACATCCAGACGAATAAGAAATGGGAGAAGGCATGGTGTTAGCGGCTGACTGACCGCAGATACTCACTCAGTATCAAACTACTGAATCAGTTAGTCTTAGTCAGGTCATGATTTAAAATATTACGTTGGGCTTGGATGAAATCAAGCCCACATCATCTCCCATGTAATAAGCAAGGGATTGGGAAAAGAGTTCTCAGGTGCAAATTAGGGTTCTTAACCATGAGTATTGATTATTTCAAGCAGGACATTGATGAACTTATCGGTGAATTCACCCAGGATGAGTCAACAACTTTGGCTGAGATAAAAAGAGTATGGCTTTCTAGGAAGTTCTCCTACATTTATGAAGCTCGTCCTTCTGCCAACCTGGCCTTCTTTATGCAATCACTGTATGCTCATTGTATAGGTTACATGGTTGGTACCGCAACTTTATCTCACAGATTAGGTGGCCTTTACTGCCTCTACTGTCTTTATGAGACTCAACCATTTAATCCTTCTTTTAAGGTCTATCTATCCCTTGGAGAATTAAAGAAACTTAGAATCCTTGTTGCTGATGCAAAAGCAAATGATATTAAAGTAGCACTTGCTTTAGTAAAAAGAATGCTTGAAAGAAACACATTCCTTTTTGGCTCTGTTGACTTGATGGAAGGTTGTGTCACAGAGACAGTAAATGAACTCCAACAATTACAGAATGCCCGTATTCAAGTTGCATATGAAAAGTTATTTGATAGCACTTCAATTGACAACTACATCCAGATGGACCTTGGCTTGGAAGTTGACCTTGATTTGCTGAAGAAAAAGTCATCTGGATATGCCACGGCCAAGAATGTGGCTATTCAAGAGGCGAGCAATATTTTAGACGTTGAAAACATAAAGCACTTACAAAAAGATAAGGAACTGATAGGAGATGTTGTGGAGAAGGTTGCTAACGACTGGCACGTTCAGAAACAAACATTTTATAAACAAACAGGATTAGGGGACGATGCATATGAGAAGGAACTGGAGCAATTACTTCTAGAGCAGCATCCACATGATGGAAACTCTTAACCAAGATTGAAGATGGACATCTGGGTCGTCGTGGTTACTTTTGCATGGGGAATTCATAATTAATATCCCTGTTTAGATAGTAGGAGGAAATGTGTTCCTTTTCCAGTTATTGCTGCTTTAAACAAGACAATGAAACAAAAAAAAAATGATAAAATGTATTATGCTTCATTTTATTCAACATTTCTATTTTTCTTCTATGTTTATGACCACATATTTCCTTTTCATCCGCACACTTTTTCAAATAATTTCACAAAAAAACACTTCCATACTGTCC

>Glyma13g22870.5   sequence type=transcript   gene model=Glyma13g22870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTATAGGGATGCAGGTGTCATCAATAAAATAAAACCTTCTTGCCTCACGAACTCAGACTCGCCTCTTGCCCTCACCGGCGCGGCCACCAAACGGTGCAACGCCACCAGCGTTTATTCACAGATCACACGGCGGCGACGACCTCCCTTACCAGCGCTTTGTCTCGAAAACGCGCATCTTTGACTCACTTCCTCACAGGCACGGATCGCGCTGCGCCCTCCCTCACCGACGTCAACGTGACCGGCTTCTGGTGGCACATAGCGCACTGCACTCGCACAAAGCCAACACTTCCTTTGAACTCACGCGTTCCTGGTGGAGACCCAAAAGTTCGAAACTGAACATTTTCACAAGCTTTCGGAGGGCGTTGATGAGTTCGGTAGCTATTTTGCTTTCAGAGTTCTCAGGTGCAAATTAGGGTTCTTAACCATGAGTATTGATTATTTCAAGCAGGACATTGATGAACTTATCGGTGAATTCACCCAGGATGAGTCAACAACTTTGGCTGAGATAAAAAGAGTATGGCTTTCTAGGAAGTTCTCCTACATTTATGAAGCTCGTCCTTCTGCCAACCTGGCCTTCTTTATGCAATCACTGTATGCTCATTGTATAGGTTACATGGTTGGTACCGCAACTTTATCTCACAGATTAGGTGGCCTTTACTGCCTCTACTGTCTTTATGAGACTCAACCATTTAATCCTTCTTTTAAGGTCTATCTATCCCTTGGAGAATTAAAGAAACTTAGAATCCTTGTTGCTGATGCAAAAGCAAATGATATTAAAGTAGCACTTGCTTTAGTAAAAAGAATGCTTGAAAGAAACACATTCCTTTTTGGCTCTGTTGACTTGATGGAAGGTTGTGTCACAGAGACAGTAAATGAACTCCAACAATTACAGAATGCCCGTATTCAAGTTGCATATGAAAAGTTATTTGATAGCACTTCAATTGACAACTACATCCAGATGGACCTTGGCTTGGAAGTTGACCTTGATTTGCTGAAGAAAAAGTCATCTGGATATGCCACGGCCAAGAATGTGGCTATTCAAGAGGCGAGCAATATTTTAGACGTTGAAAACATAAAGCACTTACAAAAAGATAAGGAACTGATAGGAGATGTTGTGGAGAAGGTTGCTAACGACTGGCACGTTCAGAAACAAACATTTTATAAACAAACAGGATTAGGGGACGATGCATATGAGAAGGAACTGGAGCAATTACTTCTAGAGCAGCATCCACATGATGGAAACTCTTAACCAAGATTGAAGATGGACATCTGGGTCGTCGTGGTTACTTTTGCATGGGGAATTCATAATTAATATCCCTGTTTAGATAGTAGGAGGAAATGTGTTCCTTTTCCAGTTATTGCTGCTTTAAACAAGACAATGAAACAAAAAAAAAATGATAAAATGTATTATGCTTCATTTTATTCAACATTTCTATTTTTCTTCTATGTTTATGACCACATATTTCCTTTTCATCCGCACACTTTTTCAAATAATTTCACAAAAAAACACTTCCATACTGTCC

>Glyma13g22870.6   sequence type=transcript   gene model=Glyma13g22870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAAATAAAACCTTCTTGCCTCACGAACTCAGACTCGCCTCTTGCCCTCACCGGCGCGGCCACCAAACGGTGCAACGCCACCAGCGTTTATTCACAGATCACACGGCGGCGACGACCTCCCTTACCAGCGCTTTGTCTCGAAAACGCGCATCTTTGACTCACTTCCTCACAGGCACGGATCGCGCTGCGCCCTCCCTCACCGACGTCAACGTGACCGGCTTCTGGTGGCACATAGCGCACTGCACTCGCACAAAGCCAACACTTCCTTTGAACTCACGCGTTCCTGGAGACCCAAAAGTTCGAAACTGAACATTTTCACAAGCTTTCGGAGGGCGTTGATGAGTTCGGTAGCTATTTTGCTTTCAGAGTTCTCAGGTGCAAATTAGGGTTCTTAACCATGAGTATTGATTATTTCAAGCAGGACATTGATGAACTTATCGGTGAATTCACCCAGGATGAGTCAACAACTTTGGCTGAGATAAAAAGAGTATGGCTTTCTAGGAAGTTCTCCTACATTTATGAAGCTCGTCCTTCTGCCAACCTGGCCTTCTTTATGCAATCACTGTATGCTCATTGTATAGGTTACATGGTTGGTACCGCAACTTTATCTCACAGATTAGGTGGCCTTTACTGCCTCTACTGTCTTTATGAGACTCAACCATTTAATCCTTCTTTTAAGGTCTATCTATCCCTTGGAGAATTAAAGAAACTTAGAATCCTTGTTGCTGATGCAAAAGCAAATGATATTAAAGTAGCACTTGCTTTAGTAAAAAGAATGCTTGAAAGAAACACATTCCTTTTTGGCTCTGTTGACTTGATGGAAGGTTGTGTCACAGAGACAGTAAATGAACTCCAACAATTACAGAATGCCCGTATTCAAGTTGCATATGAAAAGTTATTTGATAGCACTTCAATTGACAACTACATCCAGATGGACCTTGGCTTGGAAGTTGACCTTGATTTGCTGAAGAAAAAGTCATCTGGATATGCCACGGCCAAGAATGTGGCTATTCAAGAGGCGAGCAATATTTTAGACGTTGAAAACATAAAGCACTTACAAAAAGATAAGGAACTGATAGGAGATGTTGTGGAGAAGGTTGCTAACGACTGGCACGTTCAGAAACAAACATTTTATAAACAAACAGGATTAGGGGACGATGCATATGAGAAGGAACTGGAGCAATTACTTCTAGAGCAGCATCCACATGATGGAAACTCTTAACCAAGATTGAAGATGGACATCTGGGTCGTCGTGGTTACTTTTGCATGGGGAATTCATAATTAATATCCCTGTTTAGATAGTAGGAGGAAATGTGTTCCTTTTCCAGTTATTGCTGCTTTAAACAAGACAATGAAACAAAAAAAAAATGATAAAATGTATTATGCTTCATTTTATTCAACATTTCTATTTTTCTTCTATGTTTATGACCACATATTTCCTTTTCATCCGCACACTTTTTCAAATAATTTCACAAAAAAACACTTCCATACTGTCC

Coding sequences of Glyma13g22870

Limit To All Plant Sequences

>Glyma13g22870.3   sequence type=CDS   gene model=Glyma13g22870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATCAAGCCCACATCATCTCCCATGTAATAAGCAAGGGATTGGGAAAAGAGTTCTCAGGTGCAAATTAGGGTTCTTAACCATGAGTATTGATTATTTCAAGCAGGACATTGATGAACTTATCGGTGAATTCACCCAGGATGAGTCAACAACTTTGGCTGAGATAAAAAGAGTATGGCTTTCTAGGAAGTTCTCCTACATTTATGAAGCTCGTCCTTCTGCCAACCTGGCCTTCTTTATGCAATCACTGTATGCTCATTGTATAGGTTACATGGTTGGTACCGCAACTTTATCTCACAGATTAGGTGGCCTTTACTGCCTCTACTGTCTTTATGAGACTCAACCATTTAATCCTTCTTTTAAGGTCTATCTATCCCTTGGAGAATTAAAGAAACTTAGAATCCTTGTTGCTGATGCAAAAGCAAATGATATTAAAGTAGCACTTGCTTTAGTAAAAAGAATGCTTGAAAGAAACACATTCCTTTTTGGCTCTGTTGACTTGATGGAAGGTTGTGTCACAGAGACAGTAAATGAACTCCAACAATTACAGAATGCCCGTATTCAAGTTGCATATGAAAAGTTATTTGATAGCACTTCAATTGACAACTACATCCAGATGGACCTTGGCTTGGAAGTTGACCTTGATTTGCTGAAGAAAAAGTCATCTGGATATGCCACGGCCAAGAATGTGGCTATTCAAGAGGCGAGCAATATTTTAGACGTTGAAAACATAAAGCACTTACAAAAAGATAAGGAACTGATAGGAGATGTTGTGGAGAAGGTTGCTAACGACTGGCACGTTCAGAAACAAACATTTTATAAACAAACAGGATTAGGGGACGATGCATATGAGAAGGAACTGGAGCAATTACTTCTAGAGCAGCATCCACATGATGGAAACTCTTAA

>Glyma13g22870.4   sequence type=CDS   gene model=Glyma13g22870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATCAAGCCCACATCATCTCCCATGTAATAAGCAAGGGATTGGGAAAAGAGTTCTCAGGTGCAAATTAGGGTTCTTAACCATGAGTATTGATTATTTCAAGCAGGACATTGATGAACTTATCGGTGAATTCACCCAGGATGAGTCAACAACTTTGGCTGAGATAAAAAGAGTATGGCTTTCTAGGAAGTTCTCCTACATTTATGAAGCTCGTCCTTCTGCCAACCTGGCCTTCTTTATGCAATCACTGTATGCTCATTGTATAGGTTACATGGTTGGTACCGCAACTTTATCTCACAGATTAGGTGGCCTTTACTGCCTCTACTGTCTTTATGAGACTCAACCATTTAATCCTTCTTTTAAGGTCTATCTATCCCTTGGAGAATTAAAGAAACTTAGAATCCTTGTTGCTGATGCAAAAGCAAATGATATTAAAGTAGCACTTGCTTTAGTAAAAAGAATGCTTGAAAGAAACACATTCCTTTTTGGCTCTGTTGACTTGATGGAAGGTTGTGTCACAGAGACAGTAAATGAACTCCAACAATTACAGAATGCCCGTATTCAAGTTGCATATGAAAAGTTATTTGATAGCACTTCAATTGACAACTACATCCAGATGGACCTTGGCTTGGAAGTTGACCTTGATTTGCTGAAGAAAAAGTCATCTGGATATGCCACGGCCAAGAATGTGGCTATTCAAGAGGCGAGCAATATTTTAGACGTTGAAAACATAAAGCACTTACAAAAAGATAAGGAACTGATAGGAGATGTTGTGGAGAAGGTTGCTAACGACTGGCACGTTCAGAAACAAACATTTTATAAACAAACAGGATTAGGGGACGATGCATATGAGAAGGAACTGGAGCAATTACTTCTAGAGCAGCATCCACATGATGGAAACTCTTAA

>Glyma13g22870.5   sequence type=CDS   gene model=Glyma13g22870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTATTGATTATTTCAAGCAGGACATTGATGAACTTATCGGTGAATTCACCCAGGATGAGTCAACAACTTTGGCTGAGATAAAAAGAGTATGGCTTTCTAGGAAGTTCTCCTACATTTATGAAGCTCGTCCTTCTGCCAACCTGGCCTTCTTTATGCAATCACTGTATGCTCATTGTATAGGTTACATGGTTGGTACCGCAACTTTATCTCACAGATTAGGTGGCCTTTACTGCCTCTACTGTCTTTATGAGACTCAACCATTTAATCCTTCTTTTAAGGTCTATCTATCCCTTGGAGAATTAAAGAAACTTAGAATCCTTGTTGCTGATGCAAAAGCAAATGATATTAAAGTAGCACTTGCTTTAGTAAAAAGAATGCTTGAAAGAAACACATTCCTTTTTGGCTCTGTTGACTTGATGGAAGGTTGTGTCACAGAGACAGTAAATGAACTCCAACAATTACAGAATGCCCGTATTCAAGTTGCATATGAAAAGTTATTTGATAGCACTTCAATTGACAACTACATCCAGATGGACCTTGGCTTGGAAGTTGACCTTGATTTGCTGAAGAAAAAGTCATCTGGATATGCCACGGCCAAGAATGTGGCTATTCAAGAGGCGAGCAATATTTTAGACGTTGAAAACATAAAGCACTTACAAAAAGATAAGGAACTGATAGGAGATGTTGTGGAGAAGGTTGCTAACGACTGGCACGTTCAGAAACAAACATTTTATAAACAAACAGGATTAGGGGACGATGCATATGAGAAGGAACTGGAGCAATTACTTCTAGAGCAGCATCCACATGATGGAAACTCTTAA

>Glyma13g22870.6   sequence type=CDS   gene model=Glyma13g22870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTATTGATTATTTCAAGCAGGACATTGATGAACTTATCGGTGAATTCACCCAGGATGAGTCAACAACTTTGGCTGAGATAAAAAGAGTATGGCTTTCTAGGAAGTTCTCCTACATTTATGAAGCTCGTCCTTCTGCCAACCTGGCCTTCTTTATGCAATCACTGTATGCTCATTGTATAGGTTACATGGTTGGTACCGCAACTTTATCTCACAGATTAGGTGGCCTTTACTGCCTCTACTGTCTTTATGAGACTCAACCATTTAATCCTTCTTTTAAGGTCTATCTATCCCTTGGAGAATTAAAGAAACTTAGAATCCTTGTTGCTGATGCAAAAGCAAATGATATTAAAGTAGCACTTGCTTTAGTAAAAAGAATGCTTGAAAGAAACACATTCCTTTTTGGCTCTGTTGACTTGATGGAAGGTTGTGTCACAGAGACAGTAAATGAACTCCAACAATTACAGAATGCCCGTATTCAAGTTGCATATGAAAAGTTATTTGATAGCACTTCAATTGACAACTACATCCAGATGGACCTTGGCTTGGAAGTTGACCTTGATTTGCTGAAGAAAAAGTCATCTGGATATGCCACGGCCAAGAATGTGGCTATTCAAGAGGCGAGCAATATTTTAGACGTTGAAAACATAAAGCACTTACAAAAAGATAAGGAACTGATAGGAGATGTTGTGGAGAAGGTTGCTAACGACTGGCACGTTCAGAAACAAACATTTTATAAACAAACAGGATTAGGGGACGATGCATATGAGAAGGAACTGGAGCAATTACTTCTAGAGCAGCATCCACATGATGGAAACTCTTAA

Predicted protein sequences of Glyma13g22870

Limit To All Plant Sequences

>Glyma13g22870.3   sequence type=predicted peptide   gene model=Glyma13g22870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSSPHHLPCNKQGIGKRVLRCKLGFLTMSIDYFKQDIDELIGEFTQDESTTLAEIKRVWLSRKFSYIYEARPSANLAFFMQSLYAHCIGYMVGTATLSHRLGGLYCLYCLYETQPFNPSFKVYLSLGELKKLRILVADAKANDIKVALALVKRMLERNTFLFGSVDLMEGCVTETVNELQQLQNARIQVAYEKLFDSTSIDNYIQMDLGLEVDLDLLKKKSSGYATAKNVAIQEASNILDVENIKHLQKDKELIGDVVEKVANDWHVQKQTFYKQTGLGDDAYEKELEQLLLEQHPHDGNS*

>Glyma13g22870.4   sequence type=predicted peptide   gene model=Glyma13g22870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSSPHHLPCNKQGIGKRVLRCKLGFLTMSIDYFKQDIDELIGEFTQDESTTLAEIKRVWLSRKFSYIYEARPSANLAFFMQSLYAHCIGYMVGTATLSHRLGGLYCLYCLYETQPFNPSFKVYLSLGELKKLRILVADAKANDIKVALALVKRMLERNTFLFGSVDLMEGCVTETVNELQQLQNARIQVAYEKLFDSTSIDNYIQMDLGLEVDLDLLKKKSSGYATAKNVAIQEASNILDVENIKHLQKDKELIGDVVEKVANDWHVQKQTFYKQTGLGDDAYEKELEQLLLEQHPHDGNS*

>Glyma13g22870.5   sequence type=predicted peptide   gene model=Glyma13g22870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSIDYFKQDIDELIGEFTQDESTTLAEIKRVWLSRKFSYIYEARPSANLAFFMQSLYAHCIGYMVGTATLSHRLGGLYCLYCLYETQPFNPSFKVYLSLGELKKLRILVADAKANDIKVALALVKRMLERNTFLFGSVDLMEGCVTETVNELQQLQNARIQVAYEKLFDSTSIDNYIQMDLGLEVDLDLLKKKSSGYATAKNVAIQEASNILDVENIKHLQKDKELIGDVVEKVANDWHVQKQTFYKQTGLGDDAYEKELEQLLLEQHPHDGNS*

>Glyma13g22870.6   sequence type=predicted peptide   gene model=Glyma13g22870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSIDYFKQDIDELIGEFTQDESTTLAEIKRVWLSRKFSYIYEARPSANLAFFMQSLYAHCIGYMVGTATLSHRLGGLYCLYCLYETQPFNPSFKVYLSLGELKKLRILVADAKANDIKVALALVKRMLERNTFLFGSVDLMEGCVTETVNELQQLQNARIQVAYEKLFDSTSIDNYIQMDLGLEVDLDLLKKKSSGYATAKNVAIQEASNILDVENIKHLQKDKELIGDVVEKVANDWHVQKQTFYKQTGLGDDAYEKELEQLLLEQHPHDGNS*

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