Glyma13g22800 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g22800

Feature Type:	gene_model
Chromosome:	Gm13
Start:	26289653
stop:	26292000
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g22800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G32440	AT	Annotation by Michelle Graham. TAIR10: Ubiquitin system component Cue protein \| chr5:12077014-12078396 FORWARD LENGTH=264	SoyBase	E_val: 9.00E-86	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF02845	PFAM	CUE domain	JGI		ISS
UniRef100_B6TIC6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CUE domain containing protein n=1 Tax=Zea mays RepID=B6TIC6_MAIZE	SoyBase	E_val: 6.00E-86	ISS
UniRef100_I1LZQ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZQ5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g22800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g22800

Paralog	Evidence	Comments
Glyma17g12050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g22800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g159500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g22800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g22800

Limit To All Plant Sequences

>Glyma13g22800.1   sequence type=CDS   gene model=Glyma13g22800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGCGATCATAGTGTGCGGGAAGAGATCAGCGCTGTTCCAAGACCTTCCTCCCAAGAGGATCCGTTGTTCCTCTTCTTCTTCTCCCGTTCACCTCTCTCCTCCTCCTTCTTCCCTCCTCCACCACCTCGCCGCCCTTTTCCCTGACATGGACCACCACCTTCTCGAGAAAGCTCTCCAAGATTGCGGCAACGACATCGACTCCGCTATCAGAAGCTTAAACCAGCTCCGACTAGGAGCACCACCGCCTCCTTCTCTTGATTCTACTCCCATCGCATCTGATACTGCTCCTCCTCAATTGCAAGGTGGAGCAAAATGTGATGCAGAAGTTTCAGGTTCTGATGATCCAGCAGCTGGACTAAAGTATCTTACAAGCGGTGCCGAATGGGTAGAGCTTTTTGTTATTGAAATGATGAATGCTTCAAACATGGATGATGCCAAATCTCGAGCTTCAAGAATGCTAGAGGCATTGGAGAAGTCCATTTGCGCAAGAGCAAGTGTTGAAACAGAGCGAAACATTCACCAGGAAAATATGATGCTGAAGGAACAAGTGGAGGCCCTTATTCAAGAAAACGTGATTCTGAAGCGTGCTGTCGGTATTCAGCACGAACGCCAGAAAGAATATGAAGACAGAAATCAAGAGTTGAAGCATTTGAAGCAATTAGTGTCACAGTACCAGGAACAGGTAAGAGCTTTAGAGGTAAACAATTATGCATTGACAATGCACCTAAAGCAGGCTGAACAAAGTAGTTCCATCCCTGGCCGTTTTCATCCCGATGTTTTCTAG

Predicted protein sequences of Glyma13g22800

Limit To All Plant Sequences

>Glyma13g22800.1   sequence type=predicted peptide   gene model=Glyma13g22800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAIIVCGKRSALFQDLPPKRIRCSSSSSPVHLSPPPSSLLHHLAALFPDMDHHLLEKALQDCGNDIDSAIRSLNQLRLGAPPPPSLDSTPIASDTAPPQLQGGAKCDAEVSGSDDPAAGLKYLTSGAEWVELFVIEMMNASNMDDAKSRASRMLEALEKSICARASVETERNIHQENMMLKEQVEALIQENVILKRAVGIQHERQKEYEDRNQELKHLKQLVSQYQEQVRALEVNNYALTMHLKQAEQSSSIPGRFHPDVF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain