Glyma13g22790 - SoyBase

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Report for Sequence Feature Glyma13g22790

Feature Type:	gene_model
Chromosome:	Gm13
Start:	26276973
stop:	26281330
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g22790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15080	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr5:4886414-4888555 FORWARD LENGTH=493	SoyBase	E_val: 4.00E-176	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF661	Panther		JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_C6ZRY2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase n=1 Tax=Glycine max RepID=C6ZRY2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LZQ4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZQ4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g22790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g22790

Paralog	Evidence	Comments
Glyma17g12060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g22790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g159400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g22790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g22790

Limit To All Plant Sequences

>Glyma13g22790.2   sequence type=transcript   gene model=Glyma13g22790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAAAGTATGCATCCTACTGGTGGTGGGTATAAAGGATTGATGAATGAATGGCGGTGGAAGGCGTGAAGGAAGGAGGCACTCCAAAAAATGCTAAAACTTTGTTGGACATGAGGTTTTATGTTGTTGTGTTTTGGTAATTTCAATTCAAGCAGCACAACGCAAAGGTAAAAACAGAGAGAGAGAGAGAGTGTCCCATTCCCATCCCCCACACAAAAGGTGGTGGGAAAAAAGTTCTTTTTGTACACACTGCGATGATGGCGATGATGATGCCTGCAATCTCCAACACAAACACAAACACAAACACCATTTCCTCCTCCTCCTCCTCCTCCTCTTCTCTCTCTTTTATCACTCCCTCTACTTCTTATTTCTCAGCCAGCCATGGTTTGCTTCTTGTTCTCACTCACTAGAAGGAACCCATGAATATGAAAGTTGTTGTGAGCATGGAGAACGAGAAGAAGTGCGGTTGCTGGGCTGTCCTCAAACGCGGCGTTAGAGCAACCGAGACAAGATACTTGAATGCTAGCAATCGAGAACTTTGTCCTCCAAATGAAGCTCGATTATCTTCTGATAATCCTGATCCCCCACCTCAAGAGAAAAAGGTTCCTTGCCAGCTCCTTCAATTTACATTTCAAGAACTAAAGGCTGCAACTGGAAATTTCAGACCTGATAGCATTCTTGGGGAGGGTGGCTTTGGTTATGTTTTCAAAGGTTGGATTGAGGAAGATGGAACGGCGCCAGCGAAACCCGGGTCAGGGATTACAGTGGCTGTCAAAAGCTTGAAGCCAGATGGCCTTCAAGGCCATAGAGAATGGGTGGCTGAAGTTGACTTTCTTGGACAGCTTCACCATCCTAACCTTGTGAAACTTATTGGTTATTGCATTGAAGATGATCAGCGGCTTCTTGTTTACGAGTTTATGACCCGTGGAAGTCTAGAAAATCATCTATTCAGAAGAACCGTACCTCTTCCGTGGTCCAACAGGATTAAGATTGCCCTTGGTGCAGCAAAAGGATTGGCCTTCCTCCATAATGGTCCCGAACCAGTCATTTATAGAGATTTTAAAACATCTAACATCTTGCTTGATACGGAGTATAATGCGAAGCTTTCAGATTTTGGTCTAGCAAAAGCAGGGCCTCAAGGAGACAAAACACATGTTTCTACCAGGGTAGTTGGAACTTATGGTTATGCTGCTCCAGAATATGTCATGACAGGACACTTGACAGCTAAAAGTGATGTTTATAGCTTTGGAGTTGTGTTACTTGAGATATTAACAGGAAGAAGATCAATGGACAAGAAGCGCCCGAGTGGGGAACAAAATCTTGTTTCATGGGCTAGGCCATACTTAGCTGACAAGCGAAAACTGTACCAACTCGTGGATCCTCGCCTTGAACTAAATTATTCTCTAAAAGGAGTGCAGAAGATTTCCCAGTTAGCTTATAATTGCCTTAGTAGAGACCCCAAATCCCGTCCTAACATGGATGAAGTTATGAAGGCTCTGACTCCATTGCAGGATTTTAATGACCTTGCAATCTTGTCTTATCACTCTCGCTTATCTCAACAAGGGAGGCGGAAGAAGAAAGATGGAACTCCACAGATCACATACACACAATCCAAGAGCATGAGGGCTTCTCCCTTGAATACTGGCAAGCAGCATCGATGATGGGAAGTGATCCTCTTCTTTATTGCTGGCTCAATCATTGATTGAAACCAAGGTTGGAAATTGGAATGCCTCCTTTGTTGTTGTTGTTGTTGTTGTTGTTGTGTGGAGATGGACATTTCAAGCTTACATAATTTTTGAGTGTTTAAAATATGTCAGGGCCAGAACAATGAGGGAAGAGTGATGATACATTGATTTTATTTGGGCTCTTTTATTAGAGAGCTAACCATCAATATGAAAGAAACTTGCCATTTGCATTTGCTAATGCTGTATTTGAGAATTCCCCTATATGTATATGAAAGGCCTCACATCTCAGAAAGTCTTGTGCAGCAACCTCAATCAATTGCGTTTGTCAGTGGCAATAACATTTTGCTACTTTAGTGGCCAGATTTTTATGCTTTATTTAACATATATTGAACCAAATCATACTTCTAGTGTACACAAAAACTTGATTGCTACTATTAGTATTC

Coding sequences of Glyma13g22790

Limit To All Plant Sequences

>Glyma13g22790.1   sequence type=CDS   gene model=Glyma13g22790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATGAAAGTTGTTGTGAGCATGGAGAACGAGAAGAAGTGCGGTTGCTGGGCTGTCCTCAAACGCGGCGTTAGAGGTGCGTGCAAACCTTCAGCTTCCAGAGACTCTCCTAACACTATCCCTCGAACTAGTCTCGTTTATGATGCAGCAACCGAGACAAGATACTTGAATGCTAGCAATCGAGAACTTTGTCCTCCAAATGAAGCTCGATTATCTTCTGATAATCCTGATCCCCCACCTCAAGAGAAAAAGGTTCCTTGCCAGCTCCTTCAATTTACATTTCAAGAACTAAAGGCTGCAACTGGAAATTTCAGACCTGATAGCATTCTTGGGGAGGGTGGCTTTGGTTATGTTTTCAAAGGTTGGATTGAGGAAGATGGAACGGCGCCAGCGAAACCCGGGTCAGGGATTACAGTGGCTGTCAAAAGCTTGAAGCCAGATGGCCTTCAAGGCCATAGAGAATGGGTGGCTGAAGTTGACTTTCTTGGACAGCTTCACCATCCTAACCTTGTGAAACTTATTGGTTATTGCATTGAAGATGATCAGCGGCTTCTTGTTTACGAGTTTATGACCCGTGGAAGTCTAGAAAATCATCTATTCAGAAGAACCGTACCTCTTCCGTGGTCCAACAGGATTAAGATTGCCCTTGGTGCAGCAAAAGGATTGGCCTTCCTCCATAATGGTCCCGAACCAGTCATTTATAGAGATTTTAAAACATCTAACATCTTGCTTGATACGGAGTATAATGCGAAGCTTTCAGATTTTGGTCTAGCAAAAGCAGGGCCTCAAGGAGACAAAACACATGTTTCTACCAGGGTAGTTGGAACTTATGGTTATGCTGCTCCAGAATATGTCATGACAGGACACTTGACAGCTAAAAGTGATGTTTATAGCTTTGGAGTTGTGTTACTTGAGATATTAACAGGAAGAAGATCAATGGACAAGAAGCGCCCGAGTGGGGAACAAAATCTTGTTTCATGGGCTAGGCCATACTTAGCTGACAAGCGAAAACTGTACCAACTCGTGGATCCTCGCCTTGAACTAAATTATTCTCTAAAAGGAGTGCAGAAGATTTCCCAGTTAGCTTATAATTGCCTTAGTAGAGACCCCAAATCCCGTCCTAACATGGATGAAGTTATGAAGGCTCTGACTCCATTGCAGGATTTTAATGACCTTGCAATCTTGTCTTATCACTCTCGCTTATCTCAACAAGGGAGGCGGAAGAAGAAAGATGGAACTCCACAGATCACATACACACAATCCAAGAGCATGAGGGCTTCTCCCTTGAATACTGGCAAGCAGCATCGATGA

>Glyma13g22790.2   sequence type=CDS   gene model=Glyma13g22790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATGAAAGTTGTTGTGAGCATGGAGAACGAGAAGAAGTGCGGTTGCTGGGCTGTCCTCAAACGCGGCGTTAGAGCAACCGAGACAAGATACTTGAATGCTAGCAATCGAGAACTTTGTCCTCCAAATGAAGCTCGATTATCTTCTGATAATCCTGATCCCCCACCTCAAGAGAAAAAGGTTCCTTGCCAGCTCCTTCAATTTACATTTCAAGAACTAAAGGCTGCAACTGGAAATTTCAGACCTGATAGCATTCTTGGGGAGGGTGGCTTTGGTTATGTTTTCAAAGGTTGGATTGAGGAAGATGGAACGGCGCCAGCGAAACCCGGGTCAGGGATTACAGTGGCTGTCAAAAGCTTGAAGCCAGATGGCCTTCAAGGCCATAGAGAATGGGTGGCTGAAGTTGACTTTCTTGGACAGCTTCACCATCCTAACCTTGTGAAACTTATTGGTTATTGCATTGAAGATGATCAGCGGCTTCTTGTTTACGAGTTTATGACCCGTGGAAGTCTAGAAAATCATCTATTCAGAAGAACCGTACCTCTTCCGTGGTCCAACAGGATTAAGATTGCCCTTGGTGCAGCAAAAGGATTGGCCTTCCTCCATAATGGTCCCGAACCAGTCATTTATAGAGATTTTAAAACATCTAACATCTTGCTTGATACGGAGTATAATGCGAAGCTTTCAGATTTTGGTCTAGCAAAAGCAGGGCCTCAAGGAGACAAAACACATGTTTCTACCAGGGTAGTTGGAACTTATGGTTATGCTGCTCCAGAATATGTCATGACAGGACACTTGACAGCTAAAAGTGATGTTTATAGCTTTGGAGTTGTGTTACTTGAGATATTAACAGGAAGAAGATCAATGGACAAGAAGCGCCCGAGTGGGGAACAAAATCTTGTTTCATGGGCTAGGCCATACTTAGCTGACAAGCGAAAACTGTACCAACTCGTGGATCCTCGCCTTGAACTAAATTATTCTCTAAAAGGAGTGCAGAAGATTTCCCAGTTAGCTTATAATTGCCTTAGTAGAGACCCCAAATCCCGTCCTAACATGGATGAAGTTATGAAGGCTCTGACTCCATTGCAGGATTTTAATGACCTTGCAATCTTGTCTTATCACTCTCGCTTATCTCAACAAGGGAGGCGGAAGAAGAAAGATGGAACTCCACAGATCACATACACACAATCCAAGAGCATGAGGGCTTCTCCCTTGAATACTGGCAAGCAGCATCGATGA

Predicted protein sequences of Glyma13g22790

Limit To All Plant Sequences

>Glyma13g22790.1   sequence type=predicted peptide   gene model=Glyma13g22790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMKVVVSMENEKKCGCWAVLKRGVRGACKPSASRDSPNTIPRTSLVYDAATETRYLNASNRELCPPNEARLSSDNPDPPPQEKKVPCQLLQFTFQELKAATGNFRPDSILGEGGFGYVFKGWIEEDGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRIKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKGVQKISQLAYNCLSRDPKSRPNMDEVMKALTPLQDFNDLAILSYHSRLSQQGRRKKKDGTPQITYTQSKSMRASPLNTGKQHR*

>Glyma13g22790.2   sequence type=predicted peptide   gene model=Glyma13g22790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMKVVVSMENEKKCGCWAVLKRGVRATETRYLNASNRELCPPNEARLSSDNPDPPPQEKKVPCQLLQFTFQELKAATGNFRPDSILGEGGFGYVFKGWIEEDGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRIKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKGVQKISQLAYNCLSRDPKSRPNMDEVMKALTPLQDFNDLAILSYHSRLSQQGRRKKKDGTPQITYTQSKSMRASPLNTGKQHR*

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