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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G42160 | AT | Annotation by Michelle Graham. TAIR10: zinc finger (ubiquitin-hydrolase) domain-containing protein | chr2:17574843-17577397 REVERSE LENGTH=488 | SoyBase | E_val: 0 | ISS |
| GO:0010029 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of seed germination | SoyBase | N/A | ISS |
| GO:0000151 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0046982 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity | SoyBase | N/A | ISS |
| KOG0804 | KOG | Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) | JGI | ISS | |
| PTHR24007 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24007:SF8 | Panther | JGI | ISS | ||
| PF02148 | PFAM | Zn-finger in ubiquitin-hydrolases and other protein | JGI | ISS | |
| PF07576 | PFAM | BRCA1-associated protein 2 | JGI | ISS | |
| UniRef100_G7JE65 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein ETP1-like protein n=1 Tax=Medicago truncatula RepID=G7JE65_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LZP8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZP8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g22710 not represented in the dataset |
Glyma13g22710 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g12120 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g158700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g22710.2 sequence type=transcript gene model=Glyma13g22710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAAAAGAAGTCTTTGGCTTTGATTAATTTTCATCTCAGAAACAATCTATCAAACACATATTCCGATAAACAGAAACACCACCGTTGAATTTGAGAATCCCGGCGAGGCATGTTCTTGCTCCGAGTCCACTCGGTGGAAGAGGACCACCCTCTGGATCCCCAAACCATCTTCCAATCCCAATCCCAATCCCAATCCCAATCCCAATCCAACAACCCTAAATTCAGCGAACGCAGAGGCGCACTCCACTTGTTCCGAACCTCTTCCCATTCCTCGCTCCCAACCCAGACCTCTCTTTCTTCTCTCCTCTTCATCCTCGCCGTCCCCAACTACCTCTCCTTCCACGACTTCATTCCCTTCTGTGGACCCCACCTCGACCGTTTCCACCACCTTCTCTTCATCAGAAACGACGGCACCGAAGATCGCTATAGCGTCCTCATCGAGTTCGCCGATCACTTTGCCGCCGACGCATTTTTTACCAATTTCAATGCCAAGAAGTTTTCTCCTGCCGAGGCAGAGGTGTGCCATATTTTGTTTCTGCAATCCGTGGAGTATTCTGAATATGCAGAAGTTGCTGGGACTCCGCCTCCTGGTTGTACGGAAATACCAACTTGTCCTGTTTGTCTTGAGAGGTTGGACCCAGATACGAGTGGGATTCTCACAACACTTTGCGACCACTCATTTGATTGCCCTTGTGTTTCAAAGTGGACGTACTTGTCTTGCCAGGTTTGTCAATTCTGTCAGCAACAGGATGAGAAGCCAACCTGTTTTATTTGTGGAACATTAGATGATCTCTGGGTTTGTATGATTTGTGGATTTGTTGGATGTGGAAGATATAAAGAAGGACATGCCATTCAGCATTGGAAAGATACTCAGCATTGCTATTCTCTTGATTTTAAAACACAGCAAATTTGGGATTATGTGGGTGACAGTTATGTCCATCGACTGAACCAGGACCAGTCTAAAATTGATGGCAAGTTGGAGGAGATGAATTTTCGCTGTATGTCACTGGAAGGAGATTGTGGTATGTGCGAATGCCGTGAAGATTTGGGAATTAATGGGGCCCTTTTCAACAGCAAAGTTGAAACGATTGTGGATGAATACAACCGTCTTCTTACATCTCAGTTGGAGACACAAAGACAATATTATGAATCTTTACTAGTGGAGGCAAAAAGTAAAATGGAAAGTTCCATGTCTGAAGCAGTGGAGAAAGCTGCAGCTTCTGAAATGCAGGATATCCAAAATGAACTGGAAAAGTGTACAGAAGAAAGAAATGCCATTGCTGAGGTCAATCAGAAACTCATAAAAAATCAAGAGATTTGGCGGAAGAAGTTTAAAGAAGCTGAAGAGAGATTAGAGATATCAAGATTTTTCTAGAAGCACAAAAAACAATTGATAAAATGTCAGATTCAAATGGGATCAAGGAGGGAACAGTCCTGCCGGTGGCTTATGAGCAATCTTCTCCAGGCCACAGTAAGAGAAACAAAAAGTCTGGCCGAAGGAGGAATTAGTTGCAACCTCAACCAGAACACAATATTCGAACTTATGGGTAGTCTGCTTTTTAGGAGGGAAGGACACTGCTTCTGATTATTACACTGATACTTGTTGATATATAGAGGCAGTTCCAACTCGTGGCCATGGATTGCTGTCTGCATATTTTAGATGTTGTATAGTTTATTCTTGTAAACAGTTAGTTTAACGAATTTCGTGGTCCTAACCCTTTCCTCTCTGATGCCGTTCGTGGTTACGATGGTAACTAACCAAAAATTAGCAAGTAACAATTTAGCTCCATTGCAATGTCAGAGTCATATTTTCAGTAAATTCTTTATTATTCATTGAAATTCATTAAAATATATTCACAAAATGATATGAATTTCACT
>Glyma13g22710.1 sequence type=CDS gene model=Glyma13g22710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCTTGCTCCGAGTCCACTCGGTGGAAGAGGACCACCCTCTGGATCCCCAAACCATCTTCCAATCCCAATCCCAATCCCAATCCCAATCCCAATCCAACAACCCTAAATTCAGCGAACGCAGAGGCGCACTCCACTTGTTCCGAACCTCTTCCCATTCCTCGCTCCCAACCCAGACCTCTCTTTCTTCTCTCCTCTTCATCCTCGCCGTCCCCAACTACCTCTCCTTCCACGACTTCATTCCCTTCTGTGGACCCCACCTCGACCGTTTCCACCACCTTCTCTTCATCAGAAACGACGGCACCGAAGATCGCTATAGCGTCCTCATCGAGTTCGCCGATCACTTTGCCGCCGACGCATTTTTTACCAATTTCAATGCCAAGAAGTTTTCTCCTGCCGAGGCAGAGGTGTGCCATATTTTGTTTCTGCAATCCGTGGAGTATTCTGAATATGCAGAAGTTGCTGGGACTCCGCCTCCTGGTTGTACGGAAATACCAACTTGTCCTGTTTGTCTTGAGAGGTTGGACCCAGATACGAGTGGGATTCTCACAACACTTTGCGACCACTCATTTGATTGCCCTTGTGTTTCAAAGTGGACGTACTTGTCTTGCCAGGTTTGTCAATTCTGTCAGCAACAGGATGAGAAGCCAACCTGTTTTATTTGTGGAACATTAGATGATCTCTGGGTTTGTATGATTTGTGGATTTGTTGGATGTGGAAGATATAAAGAAGGACATGCCATTCAGCATTGGAAAGATACTCAGCATTGCTATTCTCTTGATTTTAAAACACAGCAAATTTGGGATTATGTGGGTGACAGTTATGTCCATCGACTGAACCAGGACCAGTCTAAAATTGATGGCAAGTTGGAGGAGATGAATTTTCGCTGTATGTCACTGGAAGGAGATTGTGGTATGTGCGAATGCCGTGAAGATTTGGGAATTAATGGGGCCCTTTTCAACAGCAAAGTTGAAACGATTGTGGATGAATACAACCGTCTTCTTACATCTCAGTTGGAGACACAAAGACAATATTATGAATCTTTACTAGTGGAGGCAAAAAGTAAAATGGAAAGTTCCATGTCTGAAGCAGTGGAGAAAGCTGCAGCTTCTGAAATGCAGGATATCCAAAATGAACTGGAAAAGTGTACAGAAGAAAGAAATGCCATTGCTGAGGTCAATCAGAAACTCATAAAAAATCAAGAGATTTGGCGGAAGAAGTTTAAAGAAGCTGAAGAGAGGGAAGCTAAATCAATTAAATTGATGAATGAGAGGATAATTGATTTGGAGGAACAGATTAGAGATATCAAGATTTTTCTAGAAGCACAAAAAACAATTGATAAAATGTCAGATTCAAATGGGATCAAGGAGGGAACAGTCCTGCCGGTGGCTTATGAGCAATCTTCTCCAGGCCACAGTAAGAGAAACAAAAAGTCTGGCCGAAGGAGGAATTAG >Glyma13g22710.2 sequence type=CDS gene model=Glyma13g22710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCTTGCTCCGAGTCCACTCGGTGGAAGAGGACCACCCTCTGGATCCCCAAACCATCTTCCAATCCCAATCCCAATCCCAATCCCAATCCCAATCCAACAACCCTAAATTCAGCGAACGCAGAGGCGCACTCCACTTGTTCCGAACCTCTTCCCATTCCTCGCTCCCAACCCAGACCTCTCTTTCTTCTCTCCTCTTCATCCTCGCCGTCCCCAACTACCTCTCCTTCCACGACTTCATTCCCTTCTGTGGACCCCACCTCGACCGTTTCCACCACCTTCTCTTCATCAGAAACGACGGCACCGAAGATCGCTATAGCGTCCTCATCGAGTTCGCCGATCACTTTGCCGCCGACGCATTTTTTACCAATTTCAATGCCAAGAAGTTTTCTCCTGCCGAGGCAGAGGTGTGCCATATTTTGTTTCTGCAATCCGTGGAGTATTCTGAATATGCAGAAGTTGCTGGGACTCCGCCTCCTGGTTGTACGGAAATACCAACTTGTCCTGTTTGTCTTGAGAGGTTGGACCCAGATACGAGTGGGATTCTCACAACACTTTGCGACCACTCATTTGATTGCCCTTGTGTTTCAAAGTGGACGTACTTGTCTTGCCAGGTTTGTCAATTCTGTCAGCAACAGGATGAGAAGCCAACCTGTTTTATTTGTGGAACATTAGATGATCTCTGGGTTTGTATGATTTGTGGATTTGTTGGATGTGGAAGATATAAAGAAGGACATGCCATTCAGCATTGGAAAGATACTCAGCATTGCTATTCTCTTGATTTTAAAACACAGCAAATTTGGGATTATGTGGGTGACAGTTATGTCCATCGACTGAACCAGGACCAGTCTAAAATTGATGGCAAGTTGGAGGAGATGAATTTTCGCTGTATGTCACTGGAAGGAGATTGTGGTATGTGCGAATGCCGTGAAGATTTGGGAATTAATGGGGCCCTTTTCAACAGCAAAGTTGAAACGATTGTGGATGAATACAACCGTCTTCTTACATCTCAGTTGGAGACACAAAGACAATATTATGAATCTTTACTAGTGGAGGCAAAAAGTAAAATGGAAAGTTCCATGTCTGAAGCAGTGGAGAAAGCTGCAGCTTCTGAAATGCAGGATATCCAAAATGAACTGGAAAAGTGTACAGAAGAAAGAAATGCCATTGCTGAGGTCAATCAGAAACTCATAAAAAATCAAGAGATTTGGCGGAAGAAGTTTAAAGAAGCTGAAGAGAGATTAGAGATATCAAGATTTTTCTAG
>Glyma13g22710.1 sequence type=predicted peptide gene model=Glyma13g22710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFLLRVHSVEEDHPLDPQTIFQSQSQSQSQSQSNNPKFSERRGALHLFRTSSHSSLPTQTSLSSLLFILAVPNYLSFHDFIPFCGPHLDRFHHLLFIRNDGTEDRYSVLIEFADHFAADAFFTNFNAKKFSPAEAEVCHILFLQSVEYSEYAEVAGTPPPGCTEIPTCPVCLERLDPDTSGILTTLCDHSFDCPCVSKWTYLSCQVCQFCQQQDEKPTCFICGTLDDLWVCMICGFVGCGRYKEGHAIQHWKDTQHCYSLDFKTQQIWDYVGDSYVHRLNQDQSKIDGKLEEMNFRCMSLEGDCGMCECREDLGINGALFNSKVETIVDEYNRLLTSQLETQRQYYESLLVEAKSKMESSMSEAVEKAAASEMQDIQNELEKCTEERNAIAEVNQKLIKNQEIWRKKFKEAEEREAKSIKLMNERIIDLEEQIRDIKIFLEAQKTIDKMSDSNGIKEGTVLPVAYEQSSPGHSKRNKKSGRRRN* >Glyma13g22710.2 sequence type=predicted peptide gene model=Glyma13g22710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFLLRVHSVEEDHPLDPQTIFQSQSQSQSQSQSNNPKFSERRGALHLFRTSSHSSLPTQTSLSSLLFILAVPNYLSFHDFIPFCGPHLDRFHHLLFIRNDGTEDRYSVLIEFADHFAADAFFTNFNAKKFSPAEAEVCHILFLQSVEYSEYAEVAGTPPPGCTEIPTCPVCLERLDPDTSGILTTLCDHSFDCPCVSKWTYLSCQVCQFCQQQDEKPTCFICGTLDDLWVCMICGFVGCGRYKEGHAIQHWKDTQHCYSLDFKTQQIWDYVGDSYVHRLNQDQSKIDGKLEEMNFRCMSLEGDCGMCECREDLGINGALFNSKVETIVDEYNRLLTSQLETQRQYYESLLVEAKSKMESSMSEAVEKAAASEMQDIQNELEKCTEERNAIAEVNQKLIKNQEIWRKKFKEAEERLEISRFF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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