Report for Sequence Feature Glyma13g22700
Feature Type: gene_model
Chromosome: Gm13
Start: 26193605
stop: 26196616
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g22700
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G54540 AT
Annotation by Michelle Graham. TAIR10: general control non-repressible 4 | chr3:20190393-20192564 FORWARD LENGTH=723
SoyBase E_val: 0 ISS
GO:0019243 GO-bp
Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016887 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATPase activity
SoyBase N/A ISS
GO:0017111 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity
SoyBase N/A ISS
KOG0066
KOG
eIF2-interacting protein ABC50 (ABC superfamily)
JGI ISS
PTHR19211 Panther
ATP-BINDING TRANSPORT PROTEIN-RELATED
JGI ISS
PTHR19211:SF14 Panther
gb def: abc transporter atp-binding protein [streptomyces coelicolor a3(2)]
JGI ISS
PF00005 PFAM
ABC transporter
JGI ISS
UniRef100_B9RUV8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent transporter, putative n=1 Tax=Ricinus communis RepID=B9RUV8_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1LZP7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZP7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g22700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g22700
Paralog Evidence Comments
Glyma17g12130 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g22700 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g158600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g22700
Coding sequences of Glyma13g22700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g22700.1 sequence type=CDS gene model=Glyma13g22700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAAGGAAAAAGACAGAGGATGCTGGCCCATCTGCTAAGGTCAAGGCTAGTAGCAAAGATCCTGCTAAGAAGGAAAAAATTTCTGTCTCTGCCATGCTGGCCAGTATGGATGAAAAGCCTGATAAACCTAAAAAAGTCTCTTCTTCCTCCAGTAAGCCGAAGCCCAAATCTGCTCCAAAAGCTTCCACATACACCGATGGTATTGATCTTCCTCCATCCGATGATGAAGATGATGATCTCTTGGAAGAGGAGGAAGCCAAAAGGTCCAGTCAGCAGCAGCAAAGGCCTGGTTTGAAGCCACTTGATGTGCCTATTGCTGAGAAGGAGTTGAAAAAGCGTGAAAAGAAGGATCTTTTAGCAGCACATGTTGCTGAGCAGGCAAAGAAGGAGGCTCTCAAGGATGATCACGATGCTTTCACTGTGGTCATTGGAAGCCGGGCTTCGGTGCTTGATGGAGGAGATGATGCTGATGCTAATGTCAAAGATATAACAGTAGAAAATTTCTCCGTGTCTGCACGGGGTAAAGAACTTCTGAAAAATGCAACGGTGAAGATATCTCATGGAAAGAGGTATGGTTTGGTTGGGCCCAACGGAAAGGGCAAGTCCACGCTGTTGAAGCTTCTTGCTTGGAGGAAGATACCGGTACCTAAGAATATTGATGTCCTTCTGGTTGAACAGGAGGTAGTTGGTGATGATAAAACAGCTCTTGAAGCTGTTGTTTCTGCTAATGACGAACTTGTTAAAATTCGACAAGAAGTTGCCTCTCTGCAGAATGCAGCTTCTGTTGAAGACAAAGATAATGATGAGGAAGACGATACAGGAGAGAAGCTAGCAGAGCTATATGAAAAACTACAGCTGATGGGATCTGATGCTGCTGAAGCTCAAGCATCAAAGATATTAGCTGGTTTAGGTTTTACAAAGGATATGCAAGCCCGTCCTACAAAATCCTTTAGTGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAACCAACTCTATTATTGCTTGATGAACCCACAAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTATTTGTGCCGTTGGAAGAAAACTCTGGTGGTTGTCTCACATGATAGGGATTTTCTCAACACAGTGTGTACTGAGATTATTCATCTCCATGATTTGAAACTTCATTTCTATCGTGGAAATTTTGATGATTTTGAGAGCGGGTATGAACAGCGTCGTAAAGAGATGAATAAGAAGTATGATATTTATGCCAAGCAATTGCAAGCGGCTAAGAGGAGTGGAAACCAGGCTCAGCAAAAAAAAGTTAAGGATCAAGCTAAGTTTGCAGCAGCTAAGGAAAAAAGCAAGGGCAAGGGCAAGGGCAAGGTTGATGAGGATGAGGCCCCACCAGAGGCACCTCAGAAGTGGAGGGATTACAGTGTGGAGTTTCACTTTCCTGAACCTACTGAGCTCACACCCCCACTTCTGCAGCTTATTGAAGTCAGCTTTAGCTACCCAAACCGGGAAGATTTCAGGCTCTCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACGTTGTTGAATCTTCTAGCTGGTGATTTGGTTCCTTCTGAGGGTGAAGTTCGAAGGAGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTGGACCTTCTAACAATGGATGAAACAGCTGTGCAGTATCTTCTGCGTCTCCATCCAGATCAGGAGGGACTTAGCAAGCAGGAGGCTGTCCGTGCAAAACTTGGTAAGTTTGGGCTACCAAGTCATAACCATCTTACTCCTATTGCCAAACTATCAGGAGGGCAGAAAGCTCGGGTGGTCTTCACATCTATCTCCATGTCAAATCCACACATTTTATTGTTAGATGAACCCACCAATCATCTGGACATGCAAAGTATTGATGCATTGGCCGATGCACTGGATGAATTCACCGGTGGAGTTGTTCTTGTTAGTCATGATTCAAGATTGATATCACGTGTATGTGAGGATGAAGAAAGGAGTCAAATCTGGGTTGTCGAAGATGGTACTGTCAAAAATTTCCCAGGAACATTTGAGGATTACAAGGACGACTTGCTGAGAGAGATTAAAGCTGAAGTTGATGATTGA
Predicted protein sequences of Glyma13g22700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g22700.1 sequence type=predicted peptide gene model=Glyma13g22700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGRKKTEDAGPSAKVKASSKDPAKKEKISVSAMLASMDEKPDKPKKVSSSSSKPKPKSAPKASTYTDGIDLPPSDDEDDDLLEEEEAKRSSQQQQRPGLKPLDVPIAEKELKKREKKDLLAAHVAEQAKKEALKDDHDAFTVVIGSRASVLDGGDDADANVKDITVENFSVSARGKELLKNATVKISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANDELVKIRQEVASLQNAASVEDKDNDEEDDTGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQARPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYDIYAKQLQAAKRSGNQAQQKKVKDQAKFAAAKEKSKGKGKGKVDEDEAPPEAPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRSQKLRIGRYSQHFVDLLTMDETAVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSNPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSQIWVVEDGTVKNFPGTFEDYKDDLLREIKAEVDD*