Glyma13g22570 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g22570

Feature Type:	gene_model
Chromosome:	Gm13
Start:	26068560
stop:	26069943
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g22570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_I1LZN7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZN7_SOYBN	SoyBase	E_val: 3.00E-92	ISS
UniRef100_Q8LM16	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q8LM16_ORYSJ	SoyBase	E_val: 2.00E-06	ISS

Expression Patterns of Glyma13g22570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g22570

Paralog	Evidence	Comments
Glyma17g11360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g22570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g157500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g22570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g22570

Limit To All Plant Sequences

>Glyma13g22570.3   sequence type=transcript   gene model=Glyma13g22570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAACTTTTTCCACATAGGATGCAAATGCAAGCCTCTACTAATTACTACACTCAAGAAGAATACGATGATTTCACAACTAAATTGACGCAAATACCCTTCCGAAAAACGCGTTACTGTTTCCATTAAATCGTTCTTTTCGTGACCACCCACTACAACCTCCGTGTCCTATCTCGTCATTTCATCTCTCTCCGTTTTCCCTCTCGGTCTCTCACTCTCACCTATTTAGTACTATTTTCTATTCTCTCGCTCTCTCTCTCTCTCTCTCTCCTCGTTGCATTGTAAAAGCTTCTCTCGTTCGTTCGCTCGTTCGCGTTCATGGCGGAAGAAAAATTGAGTCCTGGATCCCCTCACTCTCTGAAGAACAGACTCAGATTCTCTCTCTGCTTCTCGTGTTGCTTCCCTCACCAGCGCGTGAGGCCGAGAATCGTTCGAAGCGCGTCGCTCCACAACAAGCCACGCTCCACCGATTTCCCCTTCCCGCAACTCAAGGAAAAGTGCTGCAACTTCATCAACCGCATCGGCGGCCGCCACCGCCGCCGCCACTCCGCCGAATTCCACTACGACGCACTCAGCTACGCGCTCAACTTCGAAGACGACGCCACCGCCGACGAGAGGTACGTGGACGAACTCAAGAGTTTCTCCGCCAGATTGCCGGCGTCTCCGCTGCCGAAAGTTTCGCCAACTCCCGCCGCAATTGCAACCGCAACCGCCTCCGCGTGAATCGGTAGATCTAAAAATGTGGCGAAACAGCGTCGTTTCGAAGTAGAGTTTTTTTGGTTTTGATGTTTGTTTAATTCGCTTTTGTTTGTAGATAACCTGATAACGTCATTTTTGAGATCCAGCAATGCGAATATGCAATGCAAACAAGAGGAATATGAAAAAGCAGAAAAGGTTAAAGTGATGATGGCGTGTTTTGTCTTCTCTTGCCCTGGCTTGTTTGTTAGTTGGATATTTTGCGTAGCATTGATATTACTGTGAAGGCAGAGGTAGTAGTGTAGTGGCGTCGTGCTGCGGTGGAATCGTAACTGAATCTCTGACAGATGAGACTGCCAGACTGGGATTTAGGATATTTCTTTTTGTTCTTTTTTTGGTACACTAAGGAAGAAAAAAAGAGATCAACAAGACTAAAATACTAACATTGTATTTGACCGTGAGAAAAGAATGAAAATAAATACGTGAAAAAAAATAAAATAAAATAAAGAGAAAATGAAATTGTACCAATTGAGTTATCAAATTAAGATGAATGAAAATAGGTGATAGATAAAATAAAAATTAAATATGTTTGGTTGAAGAAAAATAGATGATAAATTATGGAAGAGATAGAGTAAAAATAGTGAAAAATGTTATAATGACCCACCTTTATAAGAATTAATTCCTTTTTC

Coding sequences of Glyma13g22570

Limit To All Plant Sequences

>Glyma13g22570.2   sequence type=CDS   gene model=Glyma13g22570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAAGAAAAATTGAGTCCTGGATCCCCTCACTCTCTGAAGAACAGACTCAGATTCTCTCTCTGCTTCTCGTGTTGCTTCCCTCACCAGCGCGTGAGGCCGAGAATCGTTCGAAGCGCGTCGCTCCACAACAAGCCACGCTCCACCGATTTCCCCTTCCCGCAACTCAAGGAAAAGTGCTGCAACTTCATCAACCGCATCGGCGGCCGCCACCGCCGCCGCCACTCCGCCGAATTCCACTACGACGCACTCAGCTACGCGCTCAACTTCGAAGACGACGCCACCGCCGACGAGAGGTACGTGGACGAACTCAAGAGTTTCTCCGCCAGATTGCCGGCGTCTCCGCTGCCGAAAGTTTCGCCAACTCCCGCCGCAATTGCAACCGCAACCGCCTCCGCGTGA

>Glyma13g22570.3   sequence type=CDS   gene model=Glyma13g22570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAAGAAAAATTGAGTCCTGGATCCCCTCACTCTCTGAAGAACAGACTCAGATTCTCTCTCTGCTTCTCGTGTTGCTTCCCTCACCAGCGCGTGAGGCCGAGAATCGTTCGAAGCGCGTCGCTCCACAACAAGCCACGCTCCACCGATTTCCCCTTCCCGCAACTCAAGGAAAAGTGCTGCAACTTCATCAACCGCATCGGCGGCCGCCACCGCCGCCGCCACTCCGCCGAATTCCACTACGACGCACTCAGCTACGCGCTCAACTTCGAAGACGACGCCACCGCCGACGAGAGGTACGTGGACGAACTCAAGAGTTTCTCCGCCAGATTGCCGGCGTCTCCGCTGCCGAAAGTTTCGCCAACTCCCGCCGCAATTGCAACCGCAACCGCCTCCGCGTGA

Predicted protein sequences of Glyma13g22570

Limit To All Plant Sequences

>Glyma13g22570.2   sequence type=predicted peptide   gene model=Glyma13g22570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEKLSPGSPHSLKNRLRFSLCFSCCFPHQRVRPRIVRSASLHNKPRSTDFPFPQLKEKCCNFINRIGGRHRRRHSAEFHYDALSYALNFEDDATADERYVDELKSFSARLPASPLPKVSPTPAAIATATASA*

>Glyma13g22570.3   sequence type=predicted peptide   gene model=Glyma13g22570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEKLSPGSPHSLKNRLRFSLCFSCCFPHQRVRPRIVRSASLHNKPRSTDFPFPQLKEKCCNFINRIGGRHRRRHSAEFHYDALSYALNFEDDATADERYVDELKSFSARLPASPLPKVSPTPAAIATATASA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain