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Report for Sequence Feature Glyma13g22500

Feature Type:gene_model
Chromosome:Gm13
Start:26028465
stop:26029624
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g22500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46490AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19079457-19079861 FORWARD LENGTH=134 SoyBaseE_val: 9.00E-19ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1LZN3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZN3_SOYBN SoyBaseE_val: 4.00E-71ISS
UniRef100_Q9FYR1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAD20160.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FYR1_ARATH SoyBaseE_val: 1.00E-13ISS

Expression Patterns of Glyma13g22500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g22500
ParalogEvidenceComments
Glyma17g11310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g22500 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g157000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g22500
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g22500
>Glyma13g22500.1   sequence type=CDS   gene model=Glyma13g22500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTGGTGCCACCCCAGATGGATTATTCTGGTCAGTGTATGAAGGGTGCATATCCTGCTACGATAACTGCGTCGAGCGACGACCCTACCACCGTAACTGTGGCTGTGCACTCCATAACAAGTCACTTATTAATTGCACGCACAAGCTTCCAAGGTGTAACAATGTGTCATACCCTATGAGGAGGGCATGGAGTGAAGGAAGCTTGGTCTTGGCAGCTTCTTCTTCTTCTCCTTCTCAAGTTGCAACTGGGGGAAGGCCACAACCAAGTTTGGCAAACGTTGAGGAGGAAAATAAGAATTGCTTTAGTTAA
Predicted protein sequences of Glyma13g22500
>Glyma13g22500.1   sequence type=predicted peptide   gene model=Glyma13g22500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATGATPDGLFWSVYEGCISCYDNCVERRPYHRNCGCALHNKSLINCTHKLPRCNNVSYPMRRAWSEGSLVLAASSSSPSQVATGGRPQPSLANVEEENKNCFS*






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