Report for Sequence Feature Glyma13g22340
Feature Type: gene_model
Chromosome: Gm13
Start: 25889067
stop: 25893852
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g22340
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G58200 AT
Annotation by Michelle Graham. TAIR10: Calcineurin-like metallo-phosphoesterase superfamily protein | chr5:23549605-23551972 FORWARD LENGTH=309
SoyBase E_val: 5.00E-129 ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0016787 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity
SoyBase N/A ISS
PF00149 PFAM
Calcineurin-like phosphoesterase
JGI ISS
UniRef100_F4KDK1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Metallophosphatase domain-containing protein n=2 Tax=Arabidopsis thaliana RepID=F4KDK1_ARATH
SoyBase E_val: 2.00E-126 ISS
UniRef100_I1LZM0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZM0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g22340
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma13g22340 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g155700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g22340
Coding sequences of Glyma13g22340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g22340.1 sequence type=CDS gene model=Glyma13g22340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTGAGCGCGTTTGTTCACGCGCCTTCAATTTGTTCTTCCAACACCCTCAGTCATTGTGTGAGTCCGAAGCTCAACCTCTCTCGCTCTTCAATGGCCGTATCCTCTATTCGAATCGCCGTCGTCGGTGATGTGCATGATTGCTGGAACCTTGAACAAGATTCGAAAGCACTTGAGCTCTTGCAGCCAGATTTGGTGCTGTTTACAGGTGATTTTGGTGAAGAAAATCTTGAAGTCATTAAGAGTGTTGTGAATCTTGAATTTGCTAAAGCAGTTATATTGGGAAACCACGATGCCTGGTTTACTAAACAGTTTTCTGGAAGCAAGGAGAAGGATAAAGTTCAGCTTCAGCTAGAATGCCTTGGTAAGGAGCACGTGGCTTATCAACGTTCAGACTTCCCTCAGATAAAAGTAAGCGTTGTTGGTGGACGACCATTTTCTATTGGGGGTAAACCAATGTTTCGGAAAAAGCTTCTTTTGGCAAGATACGGAGTCAAAGACATGGATGAGAGTGCTAAGAGAATCCAGAAAGCTGCTCTTGGAACACCAGAGGACCATTTTCTTATATTACTTGCACATAATGGACCCACAGGCCTTGGTTCTGATTCAAATGATATATGTGGAAAGGATTGGGAATTTGAGGGTGATGGTGATCATGGTGACCCAGATCTAGCACAAGCAATATCCTTGCTAAAGGAGAACAATCAGATATCCATTCCATTGGTTGTGTTCGGTCACATGCACAAAGAGCTGGCATATGGCAATGGCTTTAGGAAAATGATTGTGGTTGGCGCTGATAACACCATATACTTGAATGGGGCAATTGTTCCAAGGGTCAAAAGGTTGGGTGGTGATGAAGACAAGAAAAGCTTAGATGATGAAAGTGCCCTTGCCTCACCAGAGGCCAAAGGTACAAGAAGAGCCTTTACTTTAGTTGAGATTTCGGAAGGAAGAGTTGCCAAGATTGCAGAAAGTTGGGTCTCGGTTGTCGAAGATAGGACCACATTAGAAGAAGAGCACATACTATTTGAGAGCAGCTAG
Predicted protein sequences of Glyma13g22340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g22340.1 sequence type=predicted peptide gene model=Glyma13g22340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLSAFVHAPSICSSNTLSHCVSPKLNLSRSSMAVSSIRIAVVGDVHDCWNLEQDSKALELLQPDLVLFTGDFGEENLEVIKSVVNLEFAKAVILGNHDAWFTKQFSGSKEKDKVQLQLECLGKEHVAYQRSDFPQIKVSVVGGRPFSIGGKPMFRKKLLLARYGVKDMDESAKRIQKAALGTPEDHFLILLAHNGPTGLGSDSNDICGKDWEFEGDGDHGDPDLAQAISLLKENNQISIPLVVFGHMHKELAYGNGFRKMIVVGADNTIYLNGAIVPRVKRLGGDEDKKSLDDESALASPEAKGTRRAFTLVEISEGRVAKIAESWVSVVEDRTTLEEEHILFESS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
