SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G11470 | AT | Annotation by Michelle Graham. TAIR10: 4'-phosphopantetheinyl transferase superfamily | chr3:3610261-3612094 REVERSE LENGTH=300 | SoyBase | E_val: 2.00E-110 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009059 | GO-bp | Annotation by Michelle Graham. GO Biological Process: macromolecule biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0000287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding | SoyBase | N/A | ISS |
| GO:0008897 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: holo-[acyl-carrier-protein] synthase activity | SoyBase | N/A | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| KOG0945 | KOG | Alpha-aminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase | JGI | ISS | |
| PTHR12215 | Panther | PHOSPHOPANTETHEINE TRANSFERASE | JGI | ISS | |
| PTHR12215:SF3 | Panther | gb def: agcp3252 [anopheles gambiae str. pest] | JGI | ISS | |
| PF01648 | PFAM | 4'-phosphopantetheinyl transferase superfamily | JGI | ISS | |
| UniRef100_G7LGH8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 4'-phosphopantetheinyl transferase n=1 Tax=Medicago truncatula RepID=G7LGH8_MEDTR | SoyBase | E_val: 1.00E-123 | ISS |
| UniRef100_UPI000233D077 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D077 related cluster n=1 Tax=unknown RepID=UPI000233D077 | SoyBase | E_val: 0 | ISS |
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Glyma13g22230 not represented in the dataset |
Glyma13g22230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g154600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g22230.2 sequence type=CDS gene model=Glyma13g22230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTTCTTTGCGAGACAAAGCACGGCTGATGATGAATATATATTGCTTTGGAAGGAATCTAGTCACTACTGCTGCATCCTATTTACCTCCTGTTCAACTCCCAACACAAAGGGAAGTGCATTTTTGGTATATTTTACCTGATGAGGTAAAGAGCACAACCCTATTGAACCGATATTTAGAAATTCTATCACCTTGTGAGAAAGAAAATATATTTCGCATGCGTGGGGAACAACTGAGAAAAGGAGCACTCCTGGCCCGTGCATTGGTTCGCACTACATTGGCAAGATATCAGACGAATTTTCAAATTGATCCAAAATCCTTAAAGTTTATGAAGAACAATTATGGCAAGCCTGAGTTGGACTGGCAATATGCTGATGATTGGAGCCTACCGCATCTGCATTTTAATATCTCACACACTTCTTCTTTGATAGCTTGTGGAGTGACTGTGGGTTCACCTATTGGTATTGATGTGGAAGAGAAACAAAGGAGGTTAAAGAATGATATTTTAGCCTTTGCACAACGATTCTTTTCTCCCCATGAAATAGAAATGCTGACTCACATTGCAGACCCTGAACTTCGGCTTCAGGAGTTTATTAAATTATGGACTCTGAAGGAGTCTTATGTGAAAGCAATAGGGAGGGGCTTCTCAGCCTCACCTTTTAAGACTTTCACTATTCGATTAAGAGACCACCATGTGAAAGGAGACATCCATGCTCCACCTCTTATAACTTCTAAGGCACCTGATATTACTGTTGTTGAGGCTTCTGATGACGTGAAGAATCCGTCGAACAATTGGCAGTTTGTGCTTCTTGAGTTAGCTGGTTCTCACTACGCTGCCATTTGTATAGAACAGAACAGCGTCAATACAGGAAATGGACGTATTCCAATAAACCTGACCCTAAGGAAAACAATACCATACGTGGAGGATGAATGTATTTCTGCAACAGACAGTGCTGTAGTGATTGGTGGCTTGACTAGACTGTCAGATTAG
>Glyma13g22230.2 sequence type=predicted peptide gene model=Glyma13g22230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MISLRDKARLMMNIYCFGRNLVTTAASYLPPVQLPTQREVHFWYILPDEVKSTTLLNRYLEILSPCEKENIFRMRGEQLRKGALLARALVRTTLARYQTNFQIDPKSLKFMKNNYGKPELDWQYADDWSLPHLHFNISHTSSLIACGVTVGSPIGIDVEEKQRRLKNDILAFAQRFFSPHEIEMLTHIADPELRLQEFIKLWTLKESYVKAIGRGFSASPFKTFTIRLRDHHVKGDIHAPPLITSKAPDITVVEASDDVKNPSNNWQFVLLELAGSHYAAICIEQNSVNTGNGRIPINLTLRKTIPYVEDECISATDSAVVIGGLTRLSD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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