SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G03910 | AT | Annotation by Michelle Graham. TAIR10: ABC2 homolog 12 | chr5:1054313-1057105 REVERSE LENGTH=634 | SoyBase | E_val: 6.00E-31 | ISS |
| GO:0006200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP catabolic process | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0010315 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin efflux | SoyBase | N/A | ISS |
| GO:0010540 | GO-bp | Annotation by Michelle Graham. GO Biological Process: basipetal auxin transport | SoyBase | N/A | ISS |
| GO:0010541 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acropetal auxin transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| GO:0042626 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances | SoyBase | N/A | ISS |
| PTHR24221 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24221:SF84 | Panther | JGI | ISS | ||
| UniRef100_B9SWF7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Abc transporter, putative n=1 Tax=Ricinus communis RepID=B9SWF7_RICCO | SoyBase | E_val: 3.00E-34 | ISS |
| UniRef100_UPI000233D0EF | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D0EF related cluster n=1 Tax=unknown RepID=UPI000233D0EF | SoyBase | E_val: 4.00E-56 | ISS |
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Glyma13g22220 not represented in the dataset |
Glyma13g22220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g08560 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g22220.1 sequence type=CDS gene model=Glyma13g22220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CACAAGCCCATCCTCTGCCGCTGGCTCTGCAGCGCCCTCTCCATCTACTCCCTCTCCGTCCTCCTCTCCAAGCTCCCCACAATCGCCACCCGCCTCCATCGACGCCGCCCCCTCCTCGTCACGCGCCTCGCCGCCGGCTACGCGCAGCACGCGCTCCTCTGGGAGGCCGCGCTCGGCGCCGTCTACGATCTCCGGCTCCACTTCTTCGAAGGCGTGTCCGCTGGCGACGTGGCGTACCGAATCACCGCCGAAGCCTCCGACCTCGCCGTTACCCTGTACACTCTTCTTAACCAAAATGGAGGTCTGACTATAGTACCAAGTACTCTGCAGTTGTCGGCAATGATGATGCAGATGTTAGTCTTATACCCTTTCTTTGATTTCAGCCATGATTGTTCCTTGCATGGTGCTAGTTTTGCCTTTCTTGGTCAAGAACTTCGCAAGATATCCAAAGAGGCACATGTTAGCATTGCTGCTCTCTCAGCTTATCTAAATGAACCTGGAGAGACAGTTGCTATTGTGGGTCCTTCTGGTGGAGGTTGTATACTGATTGATAACCATAACATCCAAAACATTCGGTTGGCAAGTTTGAGAAGACATGTGCTTGTGATTTCCTATCGCTTGGAAACAGTTATGATGGCTAAACGAGTATTCCTTTTGGACGATGGGAAGCTAAAAGAGCTGCCTCAATCAACTATGTTGGAT
>Glyma13g22220.1 sequence type=predicted peptide gene model=Glyma13g22220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high HKPILCRWLCSALSIYSLSVLLSKLPTIATRLHRRRPLLVTRLAAGYAQHALLWEAALGAVYDLRLHFFEGVSAGDVAYRITAEASDLAVTLYTLLNQNGGLTIVPSTLQLSAMMMQMLVLYPFFDFSHDCSLHGASFAFLGQELRKISKEAHVSIAALSAYLNEPGETVAIVGPSGGGCILIDNHNIQNIRLASLRRHVLVISYRLETVMMAKRVFLLDDGKLKELPQSTMLD
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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