SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G03880 | AT | Annotation by Michelle Graham. TAIR10: Thioredoxin family protein | chr5:1038674-1041453 REVERSE LENGTH=339 | SoyBase | E_val: 3.00E-134 | ISS |
| GO:0019684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction | SoyBase | N/A | ISS |
| GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0045454 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| UniRef100_Q9LZC1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Emb|CAB85508.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LZC1_ARATH | SoyBase | E_val: 1.00E-121 | ISS |
| UniRef100_UPI000233D075 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D075 related cluster n=1 Tax=unknown RepID=UPI000233D075 | SoyBase | E_val: 0 | ISS |
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Glyma13g22160 not represented in the dataset |
Glyma13g22160 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g154000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g22160.2 sequence type=CDS gene model=Glyma13g22160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTTTGAACACGTTGTCACACGAGCTTAGAGTGGACAAAATCCTAATATACTTCCAAACAACCGCGCTAAGGTTGGAACTTGGAGGAACTTGTGTCTGTGTCCCTTTTTACAGAGTCATGACTATGGCTGGAGCTTTGAGTCTCTCCCAATTCCCAGTTCGTGGGTCTGTTTCTTTGCCCAAAAGAAGAATACCCAGAAGAAGCTTTTGCATTAGGGGCATGTCAGAAATCTCTTCCACTTTTTCTGTGAGCACCCAACAAGAAGAACCAACTTCTAATGCTTCGTCAGTGACAATTGCACCTCCCCCCAACTTCAAGCCCCCTGAGCCTAAACGCTTTGCAATCAGACCTGACAAGACCAGTGAAGTATTTGGAGCTTTGCTTCCTTTGCTCTTTCGCTTTGCTACCGGAGTTTTCGTTTCTGGGTATTCTTTTTCAATTGTTTCTAAGGATGAAATTCCTCCAGATGAATATGCTTTGGAACTTAATGGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTATTGAGATATATGAATTTGAGACCTGTCCATTTTGCCGAAAGGTTAGAGAAATTGTTGCCATTTTGGACCTTGATGTTCTTTTCTATCCTTGTCCAAGAAATGGCCCAAATTTCCGTCAAAAGGTTCTAGAGATGGGTGGCAAACTGCAGTTCCCCTACATGGTTGACCCAAACACAGGCGCTTCAATGTATGAATCAGATGACATAATTCGGTATTTGGTTGACAAATATGGTGATGGAAACGTTCCTCTATCTTTATCACTTGGATTTTTAACGACCCTAACTGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAGGGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCACTTAAATTATGGGCATATGGGGGGTCTCCTTTCTGCAAACTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCTGTTGTGCTAGGGGTAGCCCAAAGAGAAATATACTATATCAGAAAACTGGAACTTTCCAGGTATTTGATTTTTCTAGTGAGTTTGTCAGGTTGATGCAATACACAGTTGTTTCGTGA
>Glyma13g22160.2 sequence type=predicted peptide gene model=Glyma13g22160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTLNTLSHELRVDKILIYFQTTALRLELGGTCVCVPFYRVMTMAGALSLSQFPVRGSVSLPKRRIPRRSFCIRGMSEISSTFSVSTQQEEPTSNASSVTIAPPPNFKPPEPKRFAIRPDKTSEVFGALLPLLFRFATGVFVSGYSFSIVSKDEIPPDEYALELNGVTIKETAKLGPRPEKPIEIYEFETCPFCRKVREIVAILDLDVLFYPCPRNGPNFRQKVLEMGGKLQFPYMVDPNTGASMYESDDIIRYLVDKYGDGNVPLSLSLGFLTTLTAGLGMLSRISKGTTYTPAKFPPKPLKLWAYGGSPFCKLVREVLVELELPHLLVCCARGSPKRNILYQKTGTFQVFDFSSEFVRLMQYTVVS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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