SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G36230 | AT | Annotation by Michelle Graham. TAIR10: Aldolase-type TIM barrel family protein | chr2:15193878-15195509 REVERSE LENGTH=304 | SoyBase | E_val: 2.00E-155 | ISS |
| GO:0000105 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histidine biosynthetic process | SoyBase | N/A | ISS |
| GO:0007020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule nucleation | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0003949 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity | SoyBase | N/A | ISS |
| KOG3055 | KOG | Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase | JGI | ISS | |
| PTHR21169 | Panther | 1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] IMIDAZOLE-4-CARBOXAMIDE ISOMERASE | JGI | ISS | |
| PF00977 | PFAM | Histidine biosynthesis protein | JGI | ISS | |
| UniRef100_O82782 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic n=1 Tax=Arabidopsis thaliana RepID=HIS4_ARATH | SoyBase | E_val: 1.00E-152 | ISS |
| UniRef100_UPI000233B0C0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B0C0 related cluster n=1 Tax=unknown RepID=UPI000233B0C0 | SoyBase | E_val: 0 | ISS |
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Glyma13g22111 not represented in the dataset |
Glyma13g22111 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g08461 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g153700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g22111.1 sequence type=CDS gene model=Glyma13g22111 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTAGTCTCGCTGCACCTCATTCCTTCCGGGTTTTCGTCAACTCGCCCATCTTTCGCCCCATTAAGCTTCCTTTTCTCACTCTCAACCCTCTCTCTTCACCTTCCAGAAGATCTCCAGCTTCCGTTCAATGCGCCGTTCAATTCCGCCCCTGCATCGACATCCACAAGGGGAAAGTGAAGCAAATTGTGGGGTCGACCCTTCAAGACTTGAAAGGGGGTGACGGTTCGGATCCCGTCACCAATTTCGAGTCTGATAAGTCGGCTGCTGAGTATGCCGCGCTTTACAAACAAGATGGACTCACTGGTGGTCATGTCATCATGCTCGGAGCCGACCCTTTGAGCAAAGCTTCTGCCCTTGAAGCATTACACGCTTATCCTGGCGGTTTGCAAGTCGGAGGGGGAATAAATTCTGACAATTGTTTGAGTTACATTGAGGAAGGAGCAAGCCATGTCATTGTGACATCTTATGTATTCAATAATGGACAAATGGATCTTGGACGGCTAAAAGATCTTGTTCAAATTGTAGGAAAAGACAGGCTTGTGTTGGATCTCAGTTGCAGAAAAAAGGATGGTAAATATGCAATTGTCACTGATAGATGGCAGAAGTTCAGTGATGTTTTTGTTGATCCTGATGTAATGGAATTTCTTGCCAATTTTGCTGATGAGTTTCTGGTTCATGGTGTTGACGTTGAAGGGAAGAAGTTGGGAATTGATGAAGAGCTTGTGGCTTTGCTTGGCAAACATTCACCGATTCCTGTTACTTATGCTGGTGGTGTGACTGAAATGTCTGATCTGGAGAGGATAAAAACTGCCGGAATGGACCGTGTGAATGTTACTGTGGGCAGTGCATTGGATATTTTTGGGGGGAACTTGGCTTATGAAGAGGTTGTAGCTTGGCATGCCCAGCAAAATGCCTCTGCAGTTTAA
>Glyma13g22111.1 sequence type=predicted peptide gene model=Glyma13g22111 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRSLAAPHSFRVFVNSPIFRPIKLPFLTLNPLSSPSRRSPASVQCAVQFRPCIDIHKGKVKQIVGSTLQDLKGGDGSDPVTNFESDKSAAEYAALYKQDGLTGGHVIMLGADPLSKASALEALHAYPGGLQVGGGINSDNCLSYIEEGASHVIVTSYVFNNGQMDLGRLKDLVQIVGKDRLVLDLSCRKKDGKYAIVTDRWQKFSDVFVDPDVMEFLANFADEFLVHGVDVEGKKLGIDEELVALLGKHSPIPVTYAGGVTEMSDLERIKTAGMDRVNVTVGSALDIFGGNLAYEEVVAWHAQQNASAV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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