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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G03905 | AT | Annotation by Michelle Graham. TAIR10: Iron-sulphur cluster biosynthesis family protein | chr5:1052728-1054041 FORWARD LENGTH=158 | SoyBase | E_val: 1.00E-61 | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005198 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural molecule activity | SoyBase | N/A | ISS |
| GO:0051536 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding | SoyBase | N/A | ISS |
| KOG1119 | KOG | Mitochondrial Fe-S cluster biosynthesis protein ISA2 (contains a HesB-like domain) | JGI | ISS | |
| PTHR10072 | Panther | HES-B RELATED | JGI | ISS | |
| PF01521 | PFAM | Iron-sulphur cluster biosynthesis | JGI | ISS | |
| UniRef100_C6T5E6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T5E6_SOYBN | SoyBase | E_val: 2.00E-110 | ISS |
| UniRef100_G7KQU7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Iron-sulfur assembly protein IscA-like protein n=1 Tax=Medicago truncatula RepID=G7KQU7_MEDTR | SoyBase | E_val: 4.00E-79 | ISS |
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Glyma13g22100 not represented in the dataset |
Glyma13g22100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g08451 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g153600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g22100.4 sequence type=transcript gene model=Glyma13g22100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCACCAGCCACCTACCCTATATTATACGGCTTCAATTCAGTTCTGTCCATCGAATAACAAAGAGAAACGCAATCTTAGACAACACAACACCATTCATTTCATTTCATTTGATTTTGCGAGAGAACGGAACAACAACAACAACGATCAATGATTCGAAGCCTTGCTCTGCACTTGGCTGCACGATTCCGACACAACCACAACCTCGTGCGTCTTTCTTCTTCTTCTTCTGCCGCTTCTGCCTCCACTCTTCATCATGCCACTCCCTCTCCTTCTTCCTCTGAGCCCGTTCACATCACCCAAAACTGCGTTCGAAGAATGAAGGAACTGGAAGGTAGTGAATCATCAACAGATGGAAAAATGCTTCGTTTGAGTGTGGAAACTGGTGGATGTTCTGGATTCCAGTATGTTTTTAATCTAGATAACAGAATCAACTCAGATGACAAAGTTTTTGAGAGAGAAGGAGTTAAATTGGTCGTTGACAACATATCATACGATTTTGTAAAAGGGGCGACTGTTGATTATGTTGAGGAGCTAATCCGTTCAGCTTTTGTGGTGACTGAAAACCCCAGTGCAGTTGGTGGTTGCAGTTGTAAAAGTTCCTTCATGGTGAAACAGTAGTGATTTTCTTAGTCCTTGCCCCTTCACCCTCTGCTCAGGTTTTTTTGTAACCAATTTCGGCTCTTTTATTCCTCTAAAAAGGACGATTCATTGAACTCAAGGTAAAATTTATTGCTTGTACAATGCTCTCAATGTAAGATGCAGTTGTCCTAGTAACAAGTGATCCATTATACATTCATGGAACTCAGATATCAATAGGTTTTTTTGCAGCTGATCCCTAAAAGAAAAGGTGTCAACCTTCTTGGTCTAGCCTGGTTTGACATTACTACTTTGTAATTCGAAATTTAAGTAGTGAAATAAGTGTGAATTTGATATTCCATTGCATCAAAGTTGATCCATATCCACAACAGCAAATATTTATAGCTTATGCATCTGCAGGAATGTTTTGTAGCGTTTCGTTTTTTTTTTTTACCTCTCCAAAAGCACATCCAAGACGTCCACTTCCAAAATGTTATTATATACAATGACTTAGTCTGTTGGTCAGACACATCCAGTGAATCAGAAATATGCCGCACTATATTGTGTATAGTCTGTTCGGTCCTAAAAAGTATAATTTCCTGTCGGTTTTTTTTCTTTTTGAAGGATAATTTCCTGTTAGTTAAGTTCTTCAAAATATTAAAATTCTGAAAGTTCAGAATGTTTATCTCTTTAA
>Glyma13g22100.2 sequence type=CDS gene model=Glyma13g22100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTCGAAGCCTTGCTCTGCACTTGGCTGCACGATTCCGACACAACCACAACCTCGTGCGTCTTTCTTCTTCTTCTTCTGCCGCTTCTGCCTCCACTCTTCATCATGCCACTCCCTCTCCTTCTTCCTCTGAGCCCGTTCACATCACCCAAAACTGCGTTCGAAGAATGAAGGAACTGGAAGGTAGTGAATCATCAACAGATGGAAAAATGCTTCGTTTGAGTGTGGAAACTGGTGGATGTTCTGGATTCCAGTATGTTTTTAATCTAGATAACAGAATCAACTCAGATGACAAAGTTTTTGAGAGAGAAGGAGTTAAATTGGTCGTTGACAACATATCATACGATTTTGTAAAAGGGGCGACTGTTGATTATGTTGAGGAGCTAATCCGTTCAGCTTTTGTGGTGACTGAAAACCCCAGTGCAGTTGGTGGTTGCAGTTGTAAAAGTTCCTTCATGGTGAAACAGTAG >Glyma13g22100.4 sequence type=CDS gene model=Glyma13g22100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTCGAAGCCTTGCTCTGCACTTGGCTGCACGATTCCGACACAACCACAACCTCGTGCGTCTTTCTTCTTCTTCTTCTGCCGCTTCTGCCTCCACTCTTCATCATGCCACTCCCTCTCCTTCTTCCTCTGAGCCCGTTCACATCACCCAAAACTGCGTTCGAAGAATGAAGGAACTGGAAGGTAGTGAATCATCAACAGATGGAAAAATGCTTCGTTTGAGTGTGGAAACTGGTGGATGTTCTGGATTCCAGTATGTTTTTAATCTAGATAACAGAATCAACTCAGATGACAAAGTTTTTGAGAGAGAAGGAGTTAAATTGGTCGTTGACAACATATCATACGATTTTGTAAAAGGGGCGACTGTTGATTATGTTGAGGAGCTAATCCGTTCAGCTTTTGTGGTGACTGAAAACCCCAGTGCAGTTGGTGGTTGCAGTTGTAAAAGTTCCTTCATGGTGAAACAGTAG
>Glyma13g22100.2 sequence type=predicted peptide gene model=Glyma13g22100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIRSLALHLAARFRHNHNLVRLSSSSSAASASTLHHATPSPSSSEPVHITQNCVRRMKELEGSESSTDGKMLRLSVETGGCSGFQYVFNLDNRINSDDKVFEREGVKLVVDNISYDFVKGATVDYVEELIRSAFVVTENPSAVGGCSCKSSFMVKQ* >Glyma13g22100.4 sequence type=predicted peptide gene model=Glyma13g22100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIRSLALHLAARFRHNHNLVRLSSSSSAASASTLHHATPSPSSSEPVHITQNCVRRMKELEGSESSTDGKMLRLSVETGGCSGFQYVFNLDNRINSDDKVFEREGVKLVVDNISYDFVKGATVDYVEELIRSAFVVTENPSAVGGCSCKSSFMVKQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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