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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G36270 | AT | Annotation by Michelle Graham. TAIR10: Basic-leucine zipper (bZIP) transcription factor family protein | chr2:15204980-15206571 REVERSE LENGTH=442 | SoyBase | E_val: 5.00E-113 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009739 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus | SoyBase | N/A | ISS |
| GO:0009740 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010187 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of seed germination | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048316 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed development | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| PTHR22952 | Panther | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | JGI | ISS | |
| PTHR22952:SF35 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00170 | PFAM | bZIP transcription factor | JGI | ISS | |
| UniRef100_E0Y455 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Abscisic acid insensitive n=1 Tax=Prunus armeniaca RepID=E0Y455_PRUAR | SoyBase | E_val: 3.00E-155 | ISS |
| UniRef100_UPI000233D073 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D073 related cluster n=1 Tax=unknown RepID=UPI000233D073 | SoyBase | E_val: 0 | ISS |
|
Glyma13g22061 not represented in the dataset |
Glyma13g22061 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g08370 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g153200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g22061.2 sequence type=transcript gene model=Glyma13g22061 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTTTATTCTTTAATAATAACGCCGTGTGCTAGCTTTTGTGGCGTCTTTGTTTGTGAGCTTGAACATACAGTGTGTTTAAGTGTTGACACTCCGAAAAACACCCGAAGCAAAAAAACTCTTATTTTTCAGTTCCTCACATCCCAAGCCTTTATAAATAAGTTTTAGGGTTGTTTTGGGGTACACAAGGAACGTGTTTCGCTTGATCATTTACTAGCATTTTGGGGTGAACATTTTGTTTTCAGCAAAAAAGAAAAGGAGAGAAATCAAGAAGAACATATGGTGGTGCCTGAGTCTGAGATGAATTCCCAAAACGAGGTCGAATCGCCGCTACAATTGGAGCAGCAGCAACAACAACACAACAACAAGAACGATCCATTTTCATCACTGGGAAGACAATCTTCTTCGATATACTCCCTCACCCTTGACGAGTTCCAGCACACGCTATGGGAGAGTGGCAAGAACTTCGGGTCCATGAACATGGACGAGTTCCTCAGCAGCATATGGAGTGCAGAAGAGAATCAAGTTTTGAACAATTCCGTCTCTAACAACAACAACAACATGAACAACTTGTCTTTAGAAGCTTTGACAGAGAAAGGGGTGATAAGGAAGCAACCAAGCCTTCCTCGGCAAGGTTCTCTAACACTTCCTGCACCCTTGTGTAGGAAAACAGTGGACGAGGTTTGGTCTGAGATACACAAAGGACAACAATCTCAGCAACAACAACAGCAACAGCAAAACAATAACACTAACAACAATTGTGGCGGTGGTAGTAATAATAATAATGTGCAGAATACCGAATCTGCCCCTCGCCAACCTACCTTTGGAGAGATGACTTTGGAGGATTTCTTGGTTAAAGCTGGGGTAGTTAGGGAACAAGGTGGAATGGCTGCAATGCCTGCCATGCCTGCTCAAGCTTCAGCACATCAACATATGCAGCAGTATGGCATGTATGCAAATAACAACCCTACAATGGGGGCTTCTTTTGTCGGTAGGCCGGTAATGGGGATGGCGGGTGGCGTCGATGTCGGTGGCGGTGGTGGTGGGAATGTGGTTGCACCGCCTTACCAGGCTGTGCCTCAGGGTGGTGTTGGTGGTGCAATTGGGGATTCTTCTGGGTATGCTGGAAATGGAAAGAGGGATGTTGGGTATCCACCGGCGGCGGTGCCGCCACCGGGGGTTTGCTTTGGAGGGAGGGTGTTGAATGGTGGCGGTGGCTATGCGGCAGTGAGTAACATGGGAATGGTGGCGCCAGTGAGCCCGGTTTCACCGGAGGGGATTGGAACCGGCGAAAACTCTGGTGGTCAGTTCGGGATGGACATTAGTGTATTGAGAGGGAGAAAGAGGGTGTTGGATGGTCCTGTGGAGAAGGTGGTAGAGAGAAGGCAGAGGAGGATGATCAAGAACAGAGAATCAGCAGCCAGATCTAGAGCAAGAAAACAGGCATACACTGTTGAATTAGAAGCAGAATTAAACCAATTGAAAGAAGAGAACGGGCAACTTAAACTAGCTCTGGCTGATCTTGAGAGGAGAAGAAAGCAACAGTGTTTGGAGGAAGTGAACGGGAGAGTTCAAACCAACGCTCAGAAGGCCAAAAAGAAATTGAGATCATTGAGAAAGACCCTAAGTTGCCCTTTATGAGTCAACTAAAGGATCTACATGTGTAACCAGTGACAGTTCTTAATTAGATTTTAGTACATAGAGGAGTTGGCTGTGGTGCATCTTCTTGTGTTTTTGCATGAACAACACTCCATGATGCAAAGCAAGAAGGAAGCAAGACATAGAAAAAACTGAGACTAATGTCAAAGCCAACTAAGGCGAACAAGAACACAATTGCTAAAGCAAGTTCGTGGCCAATCAAGGATTAGATGACTGTTTTTCAAATGAGTGACTAGTTAGTGAAATATAGTAAATATATATAGTTTGTTTGTATTATTGATGACATTTTCAATGTCAAATAAATAAATCTTAGTTGCCTGTATGGCTGTATTTATATTGTAGTTTTATTGTGCAA
>Glyma13g22061.1 sequence type=CDS gene model=Glyma13g22061 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATTGGCGTTAGTGATAGACATAAGAAATGGAGTCTCTAGTTCTCGCGCAACATCCACAAGCGAGAATGGTGCCGTTGTCTTGAACAAAAAAGAAAAGGAGAGAAATCAAGAAGAACATATGGTGGTGCCTGAGTCTGAGATGAATTCCCAAAACGAGGTCGAATCGCCGCTACAATTGGAGCAGCAGCAACAACAACACAACAACAAGAACGATCCATTTTCATCACTGGGAAGACAATCTTCTTCGATATACTCCCTCACCCTTGACGAGTTCCAGCACACGCTATGGGAGAGTGGCAAGAACTTCGGGTCCATGAACATGGACGAGTTCCTCAGCAGCATATGGAGTGCAGAAGAGAATCAAGTTTTGAACAATTCCGTCTCTAACAACAACAACAACATGAACAACTTGTCTTTAGAAGCTTTGACAGAGAAAGGGGTGATAAGGAAGCAACCAAGCCTTCCTCGGCAAGGTTCTCTAACACTTCCTGCACCCTTGTGTAGGAAAACAGTGGACGAGGTTTGGTCTGAGATACACAAAGGACAACAATCTCAGCAACAACAACAGCAACAGCAAAACAATAACACTAACAACAATTGTGGCGGTGGTAGTAATAATAATAATGTGCAGAATACCGAATCTGCCCCTCGCCAACCTACCTTTGGAGAGATGACTTTGGAGGATTTCTTGGTTAAAGCTGGGGTAGTTAGGGAACAAGGTGGAATGGCTGCAATGCCTGCCATGCCTGCTCAAGCTTCAGCACATCAACATATGCAGCAGTATGGCATGTATGCAAATAACAACCCTACAATGGGGGCTTCTTTTGTCGGTAGGCCGGTAATGGGGATGGCGGGTGGCGTCGATGTCGGTGGCGGTGGTGGTGGGAATGTGGTTGCACCGCCTTACCAGGCTGTGCCTCAGGGTGGTGTTGGTGGTGCAATTGGGGATTCTTCTGGGTATGCTGGAAATGGAAAGAGGGATGTTGGGTATCCACCGGCGGCGGTGCCGCCACCGGGGGTTTGCTTTGGAGGGAGGGTGTTGAATGGTGGCGGTGGCTATGCGGCAGTGAGTAACATGGGAATGGTGGCGCCAGTGAGCCCGGTTTCACCGGAGGGGATTGGAACCGGCGAAAACTCTGGTGGTCAGTTCGGGATGGACATTAGTGTATTGAGAGGGAGAAAGAGGGTGTTGGATGGTCCTGTGGAGAAGGTGGTAGAGAGAAGGCAGAGGAGGATGATCAAGAACAGAGAATCAGCAGCCAGATCTAGAGCAAGAAAACAGGCATACACTGTTGAATTAGAAGCAGAATTAAACCAATTGAAAGAAGAGAACGGGCAACTTAAACTAGCTCTGGCTGATCTTGAGAGGAGAAGAAAGCAACAGTGTTTGGAGGAAGTGAACGGGAGAGTTCAAACCAACGCTCAGAAGGCCAAAAAGAAATTGAGATCATTGAGAAAGACCCTAAGTTGCCCTTTATGA >Glyma13g22061.2 sequence type=CDS gene model=Glyma13g22061 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGTGCCTGAGTCTGAGATGAATTCCCAAAACGAGGTCGAATCGCCGCTACAATTGGAGCAGCAGCAACAACAACACAACAACAAGAACGATCCATTTTCATCACTGGGAAGACAATCTTCTTCGATATACTCCCTCACCCTTGACGAGTTCCAGCACACGCTATGGGAGAGTGGCAAGAACTTCGGGTCCATGAACATGGACGAGTTCCTCAGCAGCATATGGAGTGCAGAAGAGAATCAAGTTTTGAACAATTCCGTCTCTAACAACAACAACAACATGAACAACTTGTCTTTAGAAGCTTTGACAGAGAAAGGGGTGATAAGGAAGCAACCAAGCCTTCCTCGGCAAGGTTCTCTAACACTTCCTGCACCCTTGTGTAGGAAAACAGTGGACGAGGTTTGGTCTGAGATACACAAAGGACAACAATCTCAGCAACAACAACAGCAACAGCAAAACAATAACACTAACAACAATTGTGGCGGTGGTAGTAATAATAATAATGTGCAGAATACCGAATCTGCCCCTCGCCAACCTACCTTTGGAGAGATGACTTTGGAGGATTTCTTGGTTAAAGCTGGGGTAGTTAGGGAACAAGGTGGAATGGCTGCAATGCCTGCCATGCCTGCTCAAGCTTCAGCACATCAACATATGCAGCAGTATGGCATGTATGCAAATAACAACCCTACAATGGGGGCTTCTTTTGTCGGTAGGCCGGTAATGGGGATGGCGGGTGGCGTCGATGTCGGTGGCGGTGGTGGTGGGAATGTGGTTGCACCGCCTTACCAGGCTGTGCCTCAGGGTGGTGTTGGTGGTGCAATTGGGGATTCTTCTGGGTATGCTGGAAATGGAAAGAGGGATGTTGGGTATCCACCGGCGGCGGTGCCGCCACCGGGGGTTTGCTTTGGAGGGAGGGTGTTGAATGGTGGCGGTGGCTATGCGGCAGTGAGTAACATGGGAATGGTGGCGCCAGTGAGCCCGGTTTCACCGGAGGGGATTGGAACCGGCGAAAACTCTGGTGGTCAGTTCGGGATGGACATTAGTGTATTGAGAGGGAGAAAGAGGGTGTTGGATGGTCCTGTGGAGAAGGTGGTAGAGAGAAGGCAGAGGAGGATGATCAAGAACAGAGAATCAGCAGCCAGATCTAGAGCAAGAAAACAGGCATACACTGTTGAATTAGAAGCAGAATTAAACCAATTGAAAGAAGAGAACGGGCAACTTAAACTAGCTCTGGCTGATCTTGAGAGGAGAAGAAAGCAACAGTGTTTGGAGGAAGTGAACGGGAGAGTTCAAACCAACGCTCAGAAGGCCAAAAAGAAATTGAGATCATTGAGAAAGACCCTAAGTTGCCCTTTATGA
>Glyma13g22061.1 sequence type=predicted peptide gene model=Glyma13g22061 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALALVIDIRNGVSSSRATSTSENGAVVLNKKEKERNQEEHMVVPESEMNSQNEVESPLQLEQQQQQHNNKNDPFSSLGRQSSSIYSLTLDEFQHTLWESGKNFGSMNMDEFLSSIWSAEENQVLNNSVSNNNNNMNNLSLEALTEKGVIRKQPSLPRQGSLTLPAPLCRKTVDEVWSEIHKGQQSQQQQQQQQNNNTNNNCGGGSNNNNVQNTESAPRQPTFGEMTLEDFLVKAGVVREQGGMAAMPAMPAQASAHQHMQQYGMYANNNPTMGASFVGRPVMGMAGGVDVGGGGGGNVVAPPYQAVPQGGVGGAIGDSSGYAGNGKRDVGYPPAAVPPPGVCFGGRVLNGGGGYAAVSNMGMVAPVSPVSPEGIGTGENSGGQFGMDISVLRGRKRVLDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENGQLKLALADLERRRKQQCLEEVNGRVQTNAQKAKKKLRSLRKTLSCPL* >Glyma13g22061.2 sequence type=predicted peptide gene model=Glyma13g22061 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVVPESEMNSQNEVESPLQLEQQQQQHNNKNDPFSSLGRQSSSIYSLTLDEFQHTLWESGKNFGSMNMDEFLSSIWSAEENQVLNNSVSNNNNNMNNLSLEALTEKGVIRKQPSLPRQGSLTLPAPLCRKTVDEVWSEIHKGQQSQQQQQQQQNNNTNNNCGGGSNNNNVQNTESAPRQPTFGEMTLEDFLVKAGVVREQGGMAAMPAMPAQASAHQHMQQYGMYANNNPTMGASFVGRPVMGMAGGVDVGGGGGGNVVAPPYQAVPQGGVGGAIGDSSGYAGNGKRDVGYPPAAVPPPGVCFGGRVLNGGGGYAAVSNMGMVAPVSPVSPEGIGTGENSGGQFGMDISVLRGRKRVLDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENGQLKLALADLERRRKQQCLEEVNGRVQTNAQKAKKKLRSLRKTLSCPL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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