Glyma13g22000 - SoyBase

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Report for Sequence Feature Glyma13g22000

Feature Type:	gene_model
Chromosome:	Gm13
Start:	25560085
stop:	25562044
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g22000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52770	AT	Annotation by Michelle Graham. TAIR10: protein binding \| chr3:19557891-19558094 REVERSE LENGTH=67	SoyBase	E_val: 5.00E-20	ISS
GO:0006914	GO-bp	Annotation by Michelle Graham. GO Biological Process: autophagy	SoyBase	N/A	ISS
GO:0009062	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process	SoyBase	N/A	ISS
GO:0009943	GO-bp	Annotation by Michelle Graham. GO Biological Process: adaxial/abaxial axis specification	SoyBase	N/A	ISS
GO:0010073	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem maintenance	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0010305	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation	SoyBase	N/A	ISS
GO:0010358	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf shaping	SoyBase	N/A	ISS
GO:0043433	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
UniRef100_I1LZJ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZJ1_SOYBN	SoyBase	E_val: 2.00E-44	ISS
UniRef100_Q9LXI8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein little zipper 3 n=1 Tax=Arabidopsis thaliana RepID=Q9LXI8_ARATH	SoyBase	E_val: 2.00E-17	ISS

Expression Patterns of Glyma13g22000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g22000 not represented in the dataset	Glyma13g22000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g22000

Paralog	Evidence	Comments
Glyma10g08310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g22000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g209700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g22000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g22000

Limit To All Plant Sequences

>Glyma13g22000.3   sequence type=transcript   gene model=Glyma13g22000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCGGCCGCCTTCTATGCTTACACATGCATGATTGTTGTGTCAGAGAGAGGAAGGGCACGTCCCCCCCCCCCCTTCTCATCCTTTGTGTCTGTGTTCTTCTTCTTCTCTTTCTCTTTTTTCCTCTATAAATGAGCACCCTTTGTTCCCTTTGTGCCTCACTTCCTCTTCCCCTAAACTAAAACTCACCCTTTTCGCTGCTACACTCCTTCCATAAAATCCAGACCCTCTGCTTCCCTCCACCAAAGTCTCCTACTTAGCCAAACCAACCTACCCTCCTTCAAAAGGTGATCTTTTTCGAAAAGTTCAAGAAAGAAAGACAAGAGGACCCCACCTCTTTCTCTCTCTCTCTCTCTCTCACACACACACACTATGTTTATTGTTTTGTAACTTTTGTTTTCCTCATTACTTTCACAAACAAATGTAAACATGGCATATTTCAGGCTATTGCAAAGTTAGTGTTTTTTTGGGTTTAGATATCTAAGTCCAAATCACTTGTACCCTTGGTTGCTTCGTCTATCTAACTTGAGGATTCAGATAGTTTGAGGGTTAAGTGCAGGAAATTTTGGAGATTTGATTAGTAGTGATGGAGAGGTTGAACTCAAAGCTGTACCTGCAGAACTGTTACATAATGAAGGAGAATGAGAGACTAAGGAAGAAGGCACAGCTTCTCAATCAGGAGAATCAGGCACTGTTGTCTGAGCTCAAACAGAAACTCTCCAGGGGGAATCAGAAAGCCAATGCTAGCAATACAAACGCCATTCTTGACCTGAGTCTCAGCTCAAGTGCCACTCAAAACCCTTCTAGTTCCACCAATTAATGTGCTTTAGTGATTATGGGAAGCATCTTGTGACCCCTCTAGTGACTCTAATTGTTTTTTCTTTCTAAACCTTTTTGTGTAAAACCAATGTGAGGAGCAGTGTACTTGTAGTTTCTGTTCCATAGGACAATACTAGCAATCCTCTACAGGGCACTGTTCTTCCATTTCCATGTTTAACTTTTTTTTTTTGGGGGGGGGGGGGGGGGGGTTAGATATGAATTTCTGAACTACAAGGTGAT

>Glyma13g22000.4   sequence type=transcript   gene model=Glyma13g22000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCGGCCGCCTTCTATGCTTACACATGCATGATTGTTGTGTCAGAGAGAGGAAGGGCACGTCCCCCCCCCCCCTTCTCATCCTTTGTGTCTGTGTTCTTCTTCTTCTCTTTCTCTTTTTTCCTCTATAAATGAGCACCCTTTGTTCCCTTTGTGCCTCACTTCCTCTTCCCCTAAACTAAAACTCACCCTTTTCGCTGCTACACTCCTTCCATAAAATCCAGACCCTCTGCTTCCCTCCACCAAAGTCTCCTACTTAGCCAAACCAACCTACCCTCCTTCAAAAGGGTTAAGTGCAGGAAATTTTGGAGATTTGATTAGTAGTGATGGAGAGGTTGAACTCAAAGCTGTACCTGCAGAACTGTTACATAATGAAGGAGAATGAGAGACTAAGGAAGAAGGCACAGCTTCTCAATCAGGAGAATCAGGCACTGTTGTCTGAGCTCAAACAGAAACTCTCCAGGGGGAATCAGAAAGCCAATGCTAGCAATACAAACGCCATTCTTGACCTGAGTCTCAGCTCAAGTGCCACTCAAAACCCTTCTAGTTCCACCAATTAATGTGCTTTAGTGATTATGGGAAGCATCTTGTGACCCCTCTAGTGACTCTAATTGTTTTTTCTTTCTAAACCTTTTTGTGTAAAACCAATGTGAGGAGCAGTGTACTTGTAGTTTCTGTTCCATAGGACAATACTAGCAATCCTCTACAGGGCACTGTTCTTCCATTTCCATGTTTAACTTTTTTTTTTTGGGGGGGGGGGGGGGGGGGTTAGATATGAATTTCTGAACTACAAGGTGAT

Coding sequences of Glyma13g22000

Limit To All Plant Sequences

>Glyma13g22000.2   sequence type=CDS   gene model=Glyma13g22000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGGTTGAACTCAAAGCTGTACCTGCAGAACTGTTACATAATGAAGGAGAATGAGAGACTAAGGAAGAAGGCACAGCTTCTCAATCAGGAGAATCAGGCACTGTTGTCTGAGCTCAAACAGAAACTCTCCAGGGGGAATCAGAAAGCCAATGCTAGCAATACAAACGCCATTCTTGACCTGAGTCTCAGCTCAAGTGCCACTCAAAACCCTTCTAGTTCCACCAATTAA

>Glyma13g22000.3   sequence type=CDS   gene model=Glyma13g22000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGGTTGAACTCAAAGCTGTACCTGCAGAACTGTTACATAATGAAGGAGAATGAGAGACTAAGGAAGAAGGCACAGCTTCTCAATCAGGAGAATCAGGCACTGTTGTCTGAGCTCAAACAGAAACTCTCCAGGGGGAATCAGAAAGCCAATGCTAGCAATACAAACGCCATTCTTGACCTGAGTCTCAGCTCAAGTGCCACTCAAAACCCTTCTAGTTCCACCAATTAA

>Glyma13g22000.4   sequence type=CDS   gene model=Glyma13g22000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGGTTGAACTCAAAGCTGTACCTGCAGAACTGTTACATAATGAAGGAGAATGAGAGACTAAGGAAGAAGGCACAGCTTCTCAATCAGGAGAATCAGGCACTGTTGTCTGAGCTCAAACAGAAACTCTCCAGGGGGAATCAGAAAGCCAATGCTAGCAATACAAACGCCATTCTTGACCTGAGTCTCAGCTCAAGTGCCACTCAAAACCCTTCTAGTTCCACCAATTAA

Predicted protein sequences of Glyma13g22000

Limit To All Plant Sequences

>Glyma13g22000.2   sequence type=predicted peptide   gene model=Glyma13g22000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSRGNQKANASNTNAILDLSLSSSATQNPSSSTN*

>Glyma13g22000.3   sequence type=predicted peptide   gene model=Glyma13g22000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSRGNQKANASNTNAILDLSLSSSATQNPSSSTN*

>Glyma13g22000.4   sequence type=predicted peptide   gene model=Glyma13g22000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSRGNQKANASNTNAILDLSLSSSATQNPSSSTN*

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