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Report for Sequence Feature Glyma13g21911

Feature Type:gene_model
Chromosome:Gm13
Start:25434459
stop:25447764
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g21911
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G18950AT Annotation by Michelle Graham. TAIR10: homogentisate phytyltransferase 1 | chr2:8207491-8210047 FORWARD LENGTH=393 SoyBaseE_val: 5.00E-123ISS
GO:0000096GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process SoyBaseN/AISS
GO:0006546GO-bp Annotation by Michelle Graham. GO Biological Process: glycine catabolic process SoyBaseN/AISS
GO:0006636GO-bp Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process SoyBaseN/AISS
GO:0006733GO-bp Annotation by Michelle Graham. GO Biological Process: oxidoreduction coenzyme metabolic process SoyBaseN/AISS
GO:0006766GO-bp Annotation by Michelle Graham. GO Biological Process: vitamin metabolic process SoyBaseN/AISS
GO:0008652GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process SoyBaseN/AISS
GO:0009072GO-bp Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family metabolic process SoyBaseN/AISS
GO:0009106GO-bp Annotation by Michelle Graham. GO Biological Process: lipoate metabolic process SoyBaseN/AISS
GO:0009108GO-bp Annotation by Michelle Graham. GO Biological Process: coenzyme biosynthetic process SoyBaseN/AISS
GO:0009117GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009416GO-bp Annotation by Michelle Graham. GO Biological Process: response to light stimulus SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009915GO-bp Annotation by Michelle Graham. GO Biological Process: phloem sucrose loading SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010189GO-bp Annotation by Michelle Graham. GO Biological Process: vitamin E biosynthetic process SoyBaseN/AISS
GO:0015994GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll metabolic process SoyBaseN/AISS
GO:0019216GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of lipid metabolic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019748GO-bp Annotation by Michelle Graham. GO Biological Process: secondary metabolic process SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0031347GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response SoyBaseN/AISS
GO:0031408GO-bp Annotation by Michelle Graham. GO Biological Process: oxylipin biosynthetic process SoyBaseN/AISS
GO:0042362GO-bp Annotation by Michelle Graham. GO Biological Process: fat-soluble vitamin biosynthetic process SoyBaseN/AISS
GO:0044272GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur compound biosynthetic process SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0004659GO-mf Annotation by Michelle Graham. GO Molecular Function: prenyltransferase activity SoyBaseN/AISS
GO:0010176GO-mf Annotation by Michelle Graham. GO Molecular Function: homogentisate phytyltransferase activity SoyBaseN/AISS
PTHR11048Panther PRENYLTRANSFERASES JGI ISS
PTHR11048:SF1Panther 4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE JGI ISS
PF01040PFAM UbiA prenyltransferase family JGI ISS
UniRef100_B9A1Q4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glycinol 4-dimethylallyltransferase n=1 Tax=Glycine max RepID=G4DT_SOYBN SoyBaseE_val: 5.00E-178ISS
UniRef100_UPI000233D06FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D06F related cluster n=1 Tax=unknown RepID=UPI000233D06F SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g21911
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g21911 not represented in the dataset
Glyma13g21911 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g21911 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g210400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g21911
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma13g21911
>Glyma13g21911.2   sequence type=transcript   gene model=Glyma13g21911   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTATATATAGGGGTGTGTTTTCTTTATTTGTTTTATAGAGTACTTTGTGTTGTTAGTGAGTTCCGTTTCAATGTATGGAGGGCTTGTTATGTCTTCGCCTAATTCCTGTTCACTCACAAATGTTGTAGGAGGAAATCTCTGGCGCAGGAAACATTCCACCAGCAATATTAACTATCCAGGTTCTTGTCCATCAAAAGCTTCGCAAAACAAAAGGAAAATTCAAATGGAATACAATCTTTTGAGGTTCCAACAATCTAGTTTGAATCATCATTACAAATGTATTGAAGGAGGGTCTGCATATCAAGAATGGAACAAAAAATATGTCGTGAAAGCAACCTCTAAACCATCTTTTGATTCTGGACTTCCAACTTCTAATTCCAAAAACATGTTGGACTCTGTAAAAAATTTCTTGGCAGCTTTTTATTTGTTTTGCTACCCTTACGTAATGATTGGCCGAATGTTAAGCACAATTTGTGCAAGTCTCATTGCCGTGCAGAAACTATCAGATATATCTCCATTGTTTATTATTGGTTTGTTACAGGCCTTGGTACCTTACACGTTTTTGGATGTTTATATTAATGGACTGAATCAGTTGTCTGACATTGAAATAGACAAGATAAATAAACCATATCTTCCATTGGCATCTGGACAATTATCCTTTAGAACTGGTGTTATTATTGCTGGATCATCTTTAATTTTGAGTTTTTGGCTTGGCTGGATTATAGGTTCTTGGCCACTGATTTGGAGTCTTGTAATGTGTTTTTCACTATGGACCGCTTATTCAATCAACGTACCGTTGTTGAGATGGAAGAGACATCCACTACTTGCAGCAATGTGCACTTTTCTTACTTTGACAATTATATTTCCAATTACATTTTTCCTTCACATGCAGACTATTGTGTTGAAGAGACCATTTGTCTTTCCGAGATCACTGGTTTTTGTTATTGTATTCATGAGCTTCTACAGTGTAGGCATAGCATTGTTCAAGGACATACCTGACATTGAAGGAGATAAGAAATATGGCATCCATTCTTTTTCAGCACGTTTAGGTCAAAAACGGGTATTCTGGATTTGTGTTTCACTTTTTGAAATGGCCTTTGGAGTTGCCCTCTTGGCAGGAGCAACATCTTCTTGCCTTTGGATTAAAATTGTCACGGGTCTGGGACATGCTGCTCTTGCTTCCGTTCTTTGGTATCAGGCCAAATATGTAGATTTGACAAACAAAGTTTCCATAAGATCCTTCTATATGTTGATTTGGAAGGTAATCCTATTAAATACTATTTTTCATTTTAGGAGTTGAATATCAAGATTATTATTTAAAAGAAATAGTTTTATGTTTATTTTTCCCGTGTTTTGTGAAATAAGGTAGTTATTTCTGTTGATTTCCATTTTCCAATTCAAATACAAAAACATGAGGGTAAATTGTAATGGCCCGTTATCACTACATGTCAACTAGATAACTGATAAGTGGAAGCTTTTATTTTAGTTTATTTTTAAAAAATTAATTTAGCTTTTTTTTTTATAAATAATACTTGTGAACTTTTTCACATTTCAAAAATAAAAGCTAAAGATAACTTACAACTCTGAGATAATACATCCATATATTACAAAATTATTTGAATGAAACTGTGTTACTTATGACACTACAACATGCTATCAACACACAAACCTTTTAGATATAACACTTACAAACAACTATACATCTGTATGCAATTTTTGCAAATACAAAAAAATCGTAAACACTTAAGCGGGTCAACATTAACAAAAAAGATCAAAGGAAGGAAAAGAAAAGTCAAGTCTTTGCATTCGTGTATAAACTTCGATGTTCATAGAGAAAGATCCATCTTGCCTAATCATATATTCCTGTGAACATGATCTTCAAGGTCGTGACAATCACAACCACATGTCATAATGCAAATGCAAGCTTATCAAATATAATATACTTAAATATTAAAAAACCAAGTAGCAACCACATTCAAGCCACAGAGAATATCCTATGTACAACCATTAAATTTCAACAATCAAGTATGACCAAAGAAATATTCCACAAAAAGGTATAACTTTGCAATAATGATAATAATATCATGCAAGGAAATGCATACTTGACTCCATGAAAATTTTCACCACCACATGAGCTGTTAGGGATAAAGATCAAGCTAGCTGGTTTCGAGGACCAGGGCCTCCATAGAAGAGAAGAGAAGAGGAAATAGTAAGGCAAGGGATATTTTCATTCATGATTCTGGCTTATTTACATACTTATTTATACTATCCTCTAATAACAGAATTCTTATCTTTTTGTGCAAGAGGAATATCACAGAATCAATTCCGTTAAGCTTGTCCCCTGCTCTAATAGCATCATCACACAATAAGGATTTCTACTAAATCCCTTTTCTACCCTTAAGCATAATCTCAAAGGTAAGTTGGCCTCATGATTCTTCTTTTGGGCTTTTCCTCAATCTGCACCTTGGTATGATCTGCTTGCACCTCTGCTGAATATTCTATTTGTACCCCTGCTCTGTGGTCTGTGGTTTCCCTATCATCTCGCGGCCCTTGGGAAATCACCTTGTCCTCAAGGTGATAGTCATGGCAAAGAGTGGACCAATCCTCCCAAGATGTATCATCTGGGGATAAGCCATGCCATTGAACCAAGACTTCCCAAGCGTCCGAAGGGGTTCTGCGATAATCCACAATTGCTGCCGGAGTGATAATAGGTTGATCATTGTGAAATTGGTCTGGTAAAGGCGCGGGAGAGGTGGTCTCCAGTTGACCACGGAATGGTTTGAGAAGAGAATAATGGAAGACCTCATGAATTTTCGTATCTGGTGGAAGTTGCAGGTGATGAGCTACTTTGCCGATGGCTTCGATAACCCGGAAGGGTCCATAGTACCTCCTTGCTAGTTTACCAGAAGAACTCTGAGAGCCTTTGGCCGAGGTCTATCTATGGGGTCGCAATTTGAGCCAAACCCAATCACCAGAATTGTAGTTTACGTCGCTTCGGCGACGGTCTGCCTGTTCCTTCATGCGACTTTGGGCTTTCAAGAGCTTTCTACGAACCATTTGGAAGGTCTCATCTCGGTCCTGCAGCAAATTATCCACGACATCCACAGTAGAGGACCCTGCGATGTACTCAGGGAAATTGAACGGCTTCTTGCCGAAAGTGAGCTCGTAAGGAGTGGTCCTGGTGGCGGAATTCCAGGACGTATTGTGTGACCACTCTGCCCAAGGAAGGTACTTTCCCCATGAGCTTGGTCGCCGGTGAACGAAGCTTCTCAGGTATTGCTCAATAGTCCTATTGAGCACCTCCGTTTGGCCATCACTTTGGGGGTGATAGGCGGTGCTCATCCGGAGTTGAGTGCCACTGCGCCGGAAAAGTTCTTGCCAGAATCTACTAATGAAGAGGGGGTCCCGATCAGACACCAAACTCCGGGGAATGCCGTGAAGCTTGACGACGATGTTGACAAATAACGAAGCTACTGCTAACGCTGTGTGAGCTGTGGGTAGCATACCCAGATGAACCCCTTTCGAGAACCTATTCACAACGACGAGGATGACTGTGTGACCTTGGTACACCGGCAAGCCCGTGATAAAATCGAGAGAAAGGTCCTCCCACGACCGTGACGGTACCGGGAGGGGACATAACAATCCAGCCATGCGCTTAGTTTCGTACTAAGCGGGAGGTCTTGAGTTCGACTCTCAACGAGAGCACCAATGTTAGGGATAAAGATCGAGCTAGCTGTTTTCGAGGACCAAGGCCTCCATAGAAGAGAAGAGAAGAGAAAATAGTAAGGCAAGGGATATTTTCATTCATGATTATGACTTATTTACATACTTATTTATACTATCCTCTAATAACAGAATTCTTATCTTTTTGTGCAAGAGGAATATCACAGAATCAATTCCGTTAAGCTTGTCCCCTGCTCTAACAGCATCATCACACAATAAGGATTTCTACTAAATCCCTTTTCTACCCTTAAGCATAATCTCGAAGTTGTTGTCCGTAGCATACCTCCTCATGCCTTTAATCAGATAAGGATGACGTTGAAGGTTAAAACCGTCCTCGTGACACATACATCAGAATAAAATGGATATGTTTTGCATCTAAACTTTATTAAAATAGAAAAAACTACAGCGATATGTGTTCCCTGGATATCAGTTCTTGTATTATTAAGATATTTATTTAAATGTGTGAAGGCTTTATGCATATCCAAACTAAGATTGACCTCTATTGTCAAATCTTTAATATGTGGAACAAGAAAATAGAAGCAAACTGCTATACCAGAATTTGAGTTAAAAATTAGTTCTTTAGGAAAGAGAATAGTGATATTAATTTTGTGTTTGTTTGTGTTGCATAGCATGAGATAGAGGTCAATTATACGAAAGGCACATATGAAATA
Coding sequences of Glyma13g21911
>Glyma13g21911.1   sequence type=CDS   gene model=Glyma13g21911   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATGGAGGGCTTGTTATGTCTTCGCCTAATTCCTGTTCACTCACAAATGTTGTAGGAGGAAATCTCTGGCGCAGGAAACATTCCACCAGCAATATTAACTATCCAGGTTCTTGTCCATCAAAAGCTTCGCAAAACAAAAGGAAAATTCAAATGGAATACAATCTTTTGAGGTTCCAACAATCTAGTTTGAATCATCATTACAAATGTATTGAAGGAGGGTCTGCATATCAAGAATGGAACAAAAAATATGTCGTGAAAGCAACCTCTAAACCATCTTTTGATTCTGGACTTCCAACTTCTAATTCCAAAAACATGTTGGACTCTGTAAAAAATTTCTTGGCAGCTTTTTATTTGTTTTGCTACCCTTACGTAATGATTGGCCGAATGTTAAGCACAATTTGTGCAAGTCTCATTGCCGTGCAGAAACTATCAGATATATCTCCATTGTTTATTATTGGTTTGTTACAGGCCTTGGTACCTTACACGTTTTTGGATGTTTATATTAATGGACTGAATCAGTTGTCTGACATTGAAATAGACAAGATAAATAAACCATATCTTCCATTGGCATCTGGACAATTATCCTTTAGAACTGGTGTTATTATTGCTGGATCATCTTTAATTTTGAGTTTTTGGCTTGGCTGGATTATAGGTTCTTGGCCACTGATTTGGAGTCTTGTAATGTGTTTTTCACTATGGACCGCTTATTCAATCAACGTACCGTTGTTGAGATGGAAGAGACATCCACTACTTGCAGCAATGTGCACTTTTCTTACTTTGACAATTATATTTCCAATTACATTTTTCCTTCACATGCAGACTATTGTGTTGAAGAGACCATTTGTCTTTCCGAGATCACTGGTTTTTGTTATTGTATTCATGAGCTTCTACAGTGTAGGCATAGCATTGTTCAAGGACATACCTGACATTGAAGGAGATAAGAAATATGGCATCCATTCTTTTTCAGCACGTTTAGGTCAAAAACGGGTATTCTGGATTTGTGTTTCACTTTTTGAAATGGCCTTTGGAGTTGCCCTCTTGGCAGGAGCAACATCTTCTTGCCTTTGGATTAAAATTGTCACGGGTCTGGGACATGCTGCTCTTGCTTCCGTTCTTTGGTATCAGGCCAAATATGTAGATTTGACAAACAAAGTTTCCATAAGATCCTTCTATATGTTGATTTGGAAGTTGTTGTCCGTAGCATACCTCCTCATGCCTTTAATCAGATAA

>Glyma13g21911.2   sequence type=CDS   gene model=Glyma13g21911   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATGGAGGGCTTGTTATGTCTTCGCCTAATTCCTGTTCACTCACAAATGTTGTAGGAGGAAATCTCTGGCGCAGGAAACATTCCACCAGCAATATTAACTATCCAGGTTCTTGTCCATCAAAAGCTTCGCAAAACAAAAGGAAAATTCAAATGGAATACAATCTTTTGAGGTTCCAACAATCTAGTTTGAATCATCATTACAAATGTATTGAAGGAGGGTCTGCATATCAAGAATGGAACAAAAAATATGTCGTGAAAGCAACCTCTAAACCATCTTTTGATTCTGGACTTCCAACTTCTAATTCCAAAAACATGTTGGACTCTGTAAAAAATTTCTTGGCAGCTTTTTATTTGTTTTGCTACCCTTACGTAATGATTGGCCGAATGTTAAGCACAATTTGTGCAAGTCTCATTGCCGTGCAGAAACTATCAGATATATCTCCATTGTTTATTATTGGTTTGTTACAGGCCTTGGTACCTTACACGTTTTTGGATGTTTATATTAATGGACTGAATCAGTTGTCTGACATTGAAATAGACAAGATAAATAAACCATATCTTCCATTGGCATCTGGACAATTATCCTTTAGAACTGGTGTTATTATTGCTGGATCATCTTTAATTTTGAGTTTTTGGCTTGGCTGGATTATAGGTTCTTGGCCACTGATTTGGAGTCTTGTAATGTGTTTTTCACTATGGACCGCTTATTCAATCAACGTACCGTTGTTGAGATGGAAGAGACATCCACTACTTGCAGCAATGTGCACTTTTCTTACTTTGACAATTATATTTCCAATTACATTTTTCCTTCACATGCAGACTATTGTGTTGAAGAGACCATTTGTCTTTCCGAGATCACTGGTTTTTGTTATTGTATTCATGAGCTTCTACAGTGTAGGCATAGCATTGTTCAAGGACATACCTGACATTGAAGGAGATAAGAAATATGGCATCCATTCTTTTTCAGCACGTTTAGGTCAAAAACGGGTATTCTGGATTTGTGTTTCACTTTTTGAAATGGCCTTTGGAGTTGCCCTCTTGGCAGGAGCAACATCTTCTTGCCTTTGGATTAAAATTGTCACGGGTCTGGGACATGCTGCTCTTGCTTCCGTTCTTTGGTATCAGGCCAAATATGTAGATTTGACAAACAAAGTTTCCATAAGATCCTTCTATATGTTGATTTGGAAGGTAATCCTATTAAATACTATTTTTCATTTTAGGAGTTGA
Predicted protein sequences of Glyma13g21911
>Glyma13g21911.1   sequence type=predicted peptide   gene model=Glyma13g21911   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYGGLVMSSPNSCSLTNVVGGNLWRRKHSTSNINYPGSCPSKASQNKRKIQMEYNLLRFQQSSLNHHYKCIEGGSAYQEWNKKYVVKATSKPSFDSGLPTSNSKNMLDSVKNFLAAFYLFCYPYVMIGRMLSTICASLIAVQKLSDISPLFIIGLLQALVPYTFLDVYINGLNQLSDIEIDKINKPYLPLASGQLSFRTGVIIAGSSLILSFWLGWIIGSWPLIWSLVMCFSLWTAYSINVPLLRWKRHPLLAAMCTFLTLTIIFPITFFLHMQTIVLKRPFVFPRSLVFVIVFMSFYSVGIALFKDIPDIEGDKKYGIHSFSARLGQKRVFWICVSLFEMAFGVALLAGATSSCLWIKIVTGLGHAALASVLWYQAKYVDLTNKVSIRSFYMLIWKLLSVAYLLMPLIR*

>Glyma13g21911.2   sequence type=predicted peptide   gene model=Glyma13g21911   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYGGLVMSSPNSCSLTNVVGGNLWRRKHSTSNINYPGSCPSKASQNKRKIQMEYNLLRFQQSSLNHHYKCIEGGSAYQEWNKKYVVKATSKPSFDSGLPTSNSKNMLDSVKNFLAAFYLFCYPYVMIGRMLSTICASLIAVQKLSDISPLFIIGLLQALVPYTFLDVYINGLNQLSDIEIDKINKPYLPLASGQLSFRTGVIIAGSSLILSFWLGWIIGSWPLIWSLVMCFSLWTAYSINVPLLRWKRHPLLAAMCTFLTLTIIFPITFFLHMQTIVLKRPFVFPRSLVFVIVFMSFYSVGIALFKDIPDIEGDKKYGIHSFSARLGQKRVFWICVSLFEMAFGVALLAGATSSCLWIKIVTGLGHAALASVLWYQAKYVDLTNKVSIRSFYMLIWKVILLNTIFHFRS*






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