SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G17020 | AT | Annotation by Michelle Graham. TAIR10: transcription factor-related | chr4:9578152-9581082 REVERSE LENGTH=452 | SoyBase | E_val: 1.00E-14 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| PTHR13152 | Panther | TFIIH, POLYPEPTIDE 4 | JGI | ISS | |
| PF03849 | PFAM | Transcription factor Tfb2 | JGI | ISS | |
| UniRef100_I1LZH8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZH8_SOYBN | SoyBase | E_val: 4.00E-33 | ISS |
| UniRef100_Q259V6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: B0213E10.4 protein n=1 Tax=Oryza sativa RepID=Q259V6_ORYSA | SoyBase | E_val: 3.00E-25 | ISS |
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Glyma13g21803 not represented in the dataset |
Glyma13g21803 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g211200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g21803.2 sequence type=transcript gene model=Glyma13g21803 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTTCTCTCTTTATCGGGCAGTGTACCACTCTCTCTCTCTCTCTCATTGACGCATTTGTTGTCGCCTCAACTGCTTCATCGCGACGCTGCGGGAGATGAGGGAGCCCAAAAGCCCACCATCTCCTTCAAGCAACACAATCGAACCCGCCATTGCTGGGACGAGAAGATGAACCTCAGAAGACTTGGAACCGCGTGAGGTCTCCCAAGAATCGCCGCAGACACGTTAGGGTTCGCAATCAGATACGCCAACGACCTCGCGTACTCCGCCTAGGTGTCGCCGCCGCCACTGACTCCAGCAGCCAGTCCACGACGGCGCCGCCGCCTTCCCCGTTGATCGTGGCCCTGCGGGCGGAGTTCGCGGTGGCGATGTCCGCAAGAAGCGCCGTGACACGAATCTCAAAGTCGGAGCGGACCTCGTGGTTCACCGAGGATAGCACCGAGCGCAATGACTGCCAGAGTACCGCGGCGGCGACGCCGGTGTGCTTCGCGTGGTGGAAAATCCGATCGAAGGAGTTCGCTGCCTTGCGCACGGCGCGCTCTGCGCCCTCATGTAGAGGATTCGTGCCTCTTTCGCTGCGATATAATTTTCTCATGTGCCAATACAGAGACAAAGAAGCTCCAAAATTAACTGAAAGTGGTTTCCAGTTTTTGCTGATGGATACAAATGCACAGCTTTGGTACATTATCAGAGAATATATCTCTAATTCTGAGATAGAGGTGTTGATGCAGCTGACCTTATCTCATTCATGCTGGAATCAGTTTTCATGGCATAGGATGGCTTATTCTTCTCCTCCTATTTCCTTCTTTCCTTCTAATAAAATTTACTCTTTAAAAAAAAGGTAAACTTTGAAAACTGATTTAGATGTTCCTTTAAAATGTATTTGTTTATGCATGTGTGTCTGTATTTGTATATGGTTTAGATAACCTTTTGGGTTATACTCCATAGTTTGCAACTTGTGTCAAAGAAAGCCTCTAGCCTTTCCTCATTTTTTTCCTGCCATTTGTGTTTTGGAACTACTTAATAGTTATATATATCAGAAGTTGTTCTTCCTGGACAATATTTTTGGAATATCCTTAATATTTCTGAAACTATTTTTAAATGAATCCACTAATTAGCTATTAAATTTTGAGCTACCTATTTCAACAAAATATTATTGCTTAGTATCAGTACGTGTGGTGTACACAGGGTAGAGTATCAACTTCCAAATCTTATTGTTGGGGCTATTACGAAAGAAAGCTTGTATAGTGCTTTTGAAAATGTCATTGTAGCAGAGCAGGTAAGTATTAGCAAATAGAAATTTTAGTGTGTAATATCTGCTTTTATAATATCATAATTGGTTTTTGCAGATAGATGGTAATGATTTATTTCTTCCTATGCTTTTGCTAGGAATAAGGGGCCTAGTACTAAACTGAATTCTAG >Glyma13g21803.3 sequence type=transcript gene model=Glyma13g21803 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTTCTCTCTTTATCGGGCAGTGTACCACTCTCTCTCTCTCTCTCATTGACGCATTTGTTGTCGCCTCAACTGCTTCATCGCGACGCTGCGGGAGATGAGGGAGCCCAAAAGCCCACCATCTCCTTCAAGCAACACAATCGAACCCGCCATTGCTGGGACGAGAAGATGAACCTCAGAAGACTTGGAACCGCGTGAGGTCTCCCAAGAATCGCCGCAGACACGTTAGGGTTCGCAATCAGATACGCCAACGACCTCGCGTACTCCGCCTAGGTGTCGCCGCCGCCACTGACTCCAGCAGCCAGTCCACGACGGCGCCGCCGCCTTCCCCGTTGATCGTGGCCCTGCGGGCGGAGTTCGCGGTGGCGATGTCCGCAAGAAGCGCCGTGACACGAATCTCAAAGTCGGAGCGGACCTCGTGGTTCACCGAGGATAGCACCGAGCGCAATGACTGCCAGAGTACCGCGGCGGCGACGCCGGTGTGCTTCGCGTGGTGGAAAATCCGATCGAAGGAGTTCGCTGCCTTGCGCACGGCGCGCTCTGCGCCCTCATGTAGAGGATTCGTGCCTCTTTCGCTGCGATATAATTTTCTCATGTGCCAATACAGAGACAAAGAAGCTCCAAAATTAACTGAAAGTGGTTTCCAGTTTTTGCTGATGGATACAAATGCACAGCTTTGGTACATTATCAGAGAATATATCTCTAATTCTGAGAGGTGTTGATGCAGCTGACCTTATCTCATTCATGCTGGAATCAGTTTTCATGGCATAGGATGGCTTATTCTTCTCCTCCTATTTCCTTCTTTCCTTCTAATAAAATTTACTCTTTAAAAAAAAGGTAAACTTTGAAAACTGATTTAGATGTTCCTTTAAAATGTATTTGTTTATGCATGTGTGTCTGTATTTGTATATGGTTTAGATAACCTTTTGGGTTATACTCCATAGTTTGCAACTTGTGTCAAAGAAAGCCTCTAGCCTTTCCTCATTTTTTTCCTGCCATTTGTGTTTTGGAACTACTTAATAGTTATATATATCAGAAGTTGTTCTTCCTGGACAATATTTTTGGAATATCCTTAATATTTCTGAAACTATTTTTAAATGAATCCACTAATTAGCTATTAAATTTTGAGCTACCTATTTCAACAAAATATTATTGCTTAGTATCAGTACGTGTGGTGTACACAGGGTAGAGTATCAACTTCCAAATCTTATTGTTGGGGCTATTACGAAAGAAAGCTTGTATAGTGCTTTTGAAAATGTCATTGTAGCAGAGCAGGTAAGTATTAGCAAATAGAAATTTTAGTGTGTAATATCTGCTTTTATAATATCATAATTGGTTTTTGCAGATAGATGGTAATGATTTATTTCTTCCTATGCTTTTGCTAGGAATAAGGGGCCTAGTACTAAACTGAATTCTAG
>Glyma13g21803.1 sequence type=CDS gene model=Glyma13g21803 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCGCAAGAAGCGCCGTGACACGAATCTCAAAGTCGGAGCGGACCTCGTGGTTCACCGAGGATAGCACCGAGCGCAATGACTGCCAGAGTACCGCGGCGGCGACGCCGGTGTGCTTCGCGTGGTGGAAAATCCGATCGAAGGAGTTCGCTGCCTTGCGCACGGCGCGCTCTGCGCCCTCATGTAGAGGATTCGTGCCTCTTTCGCTGCGATATAATTTTCTCATGTGCCAATACAGAGACAAAGAAGCTCCAAAATTAACTGAAAGTGGTTTCCAGTTTTTGCTGATGGATACAAATGCACAGCTTTGGTACATTATCAGAGAATATATCTCTAATTCTGAGATAGAGGTGTTGATGCAGCTGACCTTATCTCATTCATGCTGGAATCAGTTTTCATGGCATAGGATGGCTTATTCTTCTCCTCCTATTTCCTTCTTTCCTTCTAATAAAATTTACTCTTTAAAAAAAAGGGTAGAGTATCAACTTCCAAATCTTATTGTTGGGGCTATTACGAAAGAAAGCTTGTATAGTGCTTTTGAAAATGTCATTGTAGCAGAGCAGCTTGTCAAGTTTCTCCTGAAGCAAGCAAGTGTTGACAAGAGAACATGTGATATTTTTGGAAATTGA >Glyma13g21803.2 sequence type=CDS gene model=Glyma13g21803 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCGCAAGAAGCGCCGTGACACGAATCTCAAAGTCGGAGCGGACCTCGTGGTTCACCGAGGATAGCACCGAGCGCAATGACTGCCAGAGTACCGCGGCGGCGACGCCGGTGTGCTTCGCGTGGTGGAAAATCCGATCGAAGGAGTTCGCTGCCTTGCGCACGGCGCGCTCTGCGCCCTCATGTAGAGGATTCGTGCCTCTTTCGCTGCGATATAATTTTCTCATGTGCCAATACAGAGACAAAGAAGCTCCAAAATTAACTGAAAGTGGTTTCCAGTTTTTGCTGATGGATACAAATGCACAGCTTTGGTACATTATCAGAGAATATATCTCTAATTCTGAGATAGAGGTGTTGATGCAGCTGACCTTATCTCATTCATGCTGGAATCAGTTTTCATGGCATAGGATGGCTTATTCTTCTCCTCCTATTTCCTTCTTTCCTTCTAATAAAATTTACTCTTTAAAAAAAAGGTAA >Glyma13g21803.3 sequence type=CDS gene model=Glyma13g21803 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCGCAAGAAGCGCCGTGACACGAATCTCAAAGTCGGAGCGGACCTCGTGGTTCACCGAGGATAGCACCGAGCGCAATGACTGCCAGAGTACCGCGGCGGCGACGCCGGTGTGCTTCGCGTGGTGGAAAATCCGATCGAAGGAGTTCGCTGCCTTGCGCACGGCGCGCTCTGCGCCCTCATGTAGAGGATTCGTGCCTCTTTCGCTGCGATATAATTTTCTCATGTGCCAATACAGAGACAAAGAAGCTCCAAAATTAACTGAAAGTGGTTTCCAGTTTTTGCTGATGGATACAAATGCACAGCTTTGGTACATTATCAGAGAATATATCTCTAATTCTGAGAGGTGTTGA
>Glyma13g21803.1 sequence type=predicted peptide gene model=Glyma13g21803 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSARSAVTRISKSERTSWFTEDSTERNDCQSTAAATPVCFAWWKIRSKEFAALRTARSAPSCRGFVPLSLRYNFLMCQYRDKEAPKLTESGFQFLLMDTNAQLWYIIREYISNSEIEVLMQLTLSHSCWNQFSWHRMAYSSPPISFFPSNKIYSLKKRVEYQLPNLIVGAITKESLYSAFENVIVAEQLVKFLLKQASVDKRTCDIFGN* >Glyma13g21803.2 sequence type=predicted peptide gene model=Glyma13g21803 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSARSAVTRISKSERTSWFTEDSTERNDCQSTAAATPVCFAWWKIRSKEFAALRTARSAPSCRGFVPLSLRYNFLMCQYRDKEAPKLTESGFQFLLMDTNAQLWYIIREYISNSEIEVLMQLTLSHSCWNQFSWHRMAYSSPPISFFPSNKIYSLKKR* >Glyma13g21803.3 sequence type=predicted peptide gene model=Glyma13g21803 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSARSAVTRISKSERTSWFTEDSTERNDCQSTAAATPVCFAWWKIRSKEFAALRTARSAPSCRGFVPLSLRYNFLMCQYRDKEAPKLTESGFQFLLMDTNAQLWYIIREYISNSERC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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