SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G46020 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Casein kinase substrate, phosphoprotein PP28 (InterPro:IPR019380); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:18663075-18664629 REVERSE LENGTH=164 | SoyBase | E_val: 1.00E-55 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3375 | KOG | Phosphoprotein/predicted coiled-coil protein | JGI | ISS | |
| PTHR22055 | Panther | 28 KDA HEAT- AND ACID-STABLE PHOSPHOPROTEIN (PDGF-ASSOCIATED PROTEIN) | JGI | ISS | |
| PF10252 | PFAM | Casein kinase substrate phosphoprotein PP28 | JGI | ISS | |
| UniRef100_C6TGZ5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TGZ5_SOYBN | SoyBase | E_val: 1.00E-108 | ISS |
| UniRef100_G7IFI0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 28 kDa heat-and acid-stable phosphoprotein n=1 Tax=Medicago truncatula RepID=G7IFI0_MEDTR | SoyBase | E_val: 2.00E-84 | ISS |
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Glyma13g21760 not represented in the dataset |
Glyma13g21760 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g07980 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g211500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g21760.1 sequence type=CDS gene model=Glyma13g21760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAGAGGAAAATTCAAGAGCAAGCCCACTGGTCGCCGCCAGTTCTCCACCCCGGAAGATATGCTTGCTGGAACCTCTAACCGTCCTCGAACTTTTAGACAGAAAGAAGCTGAGCATGAAGAGGAAGAACCCGAGGAAGTATCTGGAGATGAATCTGGAGAAGAATCTGAAGAAGAAACTTCTAAGAAAAAAGGAACACAAGGGGTTATTGAGATTGAAAATCCCAACTTAGTAAAGCCAAAGACCTTGAAAGCTAGAGATGTTGATGTTGGAAAAACAACAGAACTTTCAAGGCGTGAAAGGGAGGAGATAGAGAAACAGAGAGCCCATGAGCGCTATATGAGGCTGCAAGAGCAAGGAAAAACAGAACAAGCAAAGAAGGATTTAGAACGTTTAGCTCTTATACGTCAGCAAAGGGAAGATGCTGCTAAAAAGCGAGAAGAAGAGAAAGCTGCGAAAGAGCAGAAGAAGGCTGAAGCGCGCAAGTGA
>Glyma13g21760.1 sequence type=predicted peptide gene model=Glyma13g21760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRGKFKSKPTGRRQFSTPEDMLAGTSNRPRTFRQKEAEHEEEEPEEVSGDESGEESEEETSKKKGTQGVIEIENPNLVKPKTLKARDVDVGKTTELSRREREEIEKQRAHERYMRLQEQGKTEQAKKDLERLALIRQQREDAAKKREEEKAAKEQKKAEARK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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