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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma13g21750

Feature Type:gene_model
Chromosome:Gm13
Start:25303975
stop:25305358
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g21750
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G55125AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L31 | chr5:22372737-22372967 FORWARD LENGTH=76 SoyBaseE_val: 2.00E-30ISS
PF01197PFAM Ribosomal protein L31 JGI ISS
UniRef100_I1LZ27UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZ27_SOYBN SoyBaseE_val: 9.00E-43ISS
UniRef100_Q1G3G5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein L31 n=3 Tax=Arabidopsis RepID=Q1G3G5_ARATH SoyBaseE_val: 7.00E-28ISS

Expression Patterns of Glyma13g21750
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g21750 not represented in the dataset
Glyma13g21750 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g21750 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g211600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g21750
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g21750
>Glyma13g21750.1   sequence type=CDS   gene model=Glyma13g21750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGGGCGTCCATCCACAGAAGCAATGGATATCCTACGTTACACAAACGGGTAGGTTGATGCATGTGATGATGACAAAGATACACCCTGTTGGGAAAGTTTACCACTTCCGAGCTAAGCGCCAAATGGCCGAGAGTTTAGGACAGATTGCTAAGTTCAGACGTCGCTTTGGGCTAGAAAATCCAGAGGGCAATGAAAAATGA
Predicted protein sequences of Glyma13g21750
>Glyma13g21750.1   sequence type=predicted peptide   gene model=Glyma13g21750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKGVHPQKQWISYVTQTGRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENPEGNEK*






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