Glyma13g21720 - SoyBase

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Report for Sequence Feature Glyma13g21720

Feature Type:	gene_model
Chromosome:	Gm13
Start:	25286980
stop:	25290330
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g21720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G28520	AT	Annotation by Michelle Graham. TAIR10: vascular plant one zinc finger protein \| chr1:10029713-10031479 FORWARD LENGTH=486	SoyBase	E_val: 0	ISS
GO:0009610	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048574	GO-bp	Annotation by Michelle Graham. GO Biological Process: long-day photoperiodism, flowering	SoyBase	N/A	ISS
GO:0048578	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of long-day photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
UniRef100_D5MRQ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MdVOZ1 protein n=1 Tax=Malus x domestica RepID=D5MRQ4_MALDO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D06A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D06A related cluster n=1 Tax=unknown RepID=UPI000233D06A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g21720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g21720

Paralog	Evidence	Comments
Glyma10g07940	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g21720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g211900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g21720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g21720

Limit To All Plant Sequences

>Glyma13g21720.2   sequence type=transcript   gene model=Glyma13g21720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCCCCTTTCACACACTGATCTTGATCAGTTGAGAAAGGGAATCAGAGGAGAGAAAAAAAAAAAACATTTTCTCTCTCTTCTCCCTTTCCATCTCTTTATATGACTTTCTCACCTTAAATCTTTTTCTGAAGAGAGATCATTGAACCTTGTATCTTTAATATACAAAATTTGGAGTCTCAGGGTCTTCTAGACAGGACTTAAAGTTTTGTGATGAAGAAAATTTCCAAGAGCAGCTGCAAGTTAGCATCACACAGGCTCTTTAAGGACAAGGCAAGGAACCATGTTGATGATCTGCAGGTGATGTTCTTGGATCTGCAGTTTGCCAGAAAGGAGAGCCGTACTATTGATGCTGCACTTCTGGAGGAGCAAGTCCATCAGATGCTTCGTGAGTGGAAGGCTGAGCTTAACGAGCCATCTCCTGCTTCCTCTTTGCAGCAAGGTGGCAGTCTTGGTTCATTCTCTACCGATGTCTATAGGCTATTGCAGCTCTGTGAGGAGGAAGATGATGCCACTAGTCCATTAGTTGCACCTAAGCCTGAACCTAATGATCAGATTATGCAGGCTGGGGCTAAGGTGATAGTCCAAGAGGGTCAACATCAACAGGAATTACTATTACTTAAGGAATGCAAACCCTTCACTGTAGGATTTCCCAACTTGGATGGAACTGCTTTAGAGTATCACCAATTTGATATCAATAAGGATATGGATGACAGCTTCTATGCTGGTACAGGTTTTTGTGAGGAAGGTCGTGTTCCTCACATATCTAGCTATCTGCCAAGTGTGTGCCCTCCTCCTTCTGCTTTCTTAGGCCCAAAATGCGCACTTTGGGACTGTCCAAGACCAGTTCAAGGCTTGGACTGGTGTCAAGACTATTGCAGTAGCTTTCACGCCGCTCTAGCTTTAAACGAAGGACCACCAGGGATGACCCCAGTTCTAAGACCTGGGGGAATTGGACTCAAGGATAATTTACTTTTTGCTGCTCTTAGTGCAAAGGCACAAGGAAAAGTTGTTGGAATCCCAGAATGTGAGGGAGCAGCAACCGCAAAATCTCCATGGAATGCACCTGAGCTCTTTGATATATGTGTTCTAGAGGGTGAGACTATTAGGGAGTGGCTATTCTTTGATAAGCCTAGAAGGGCATTTGAGAGTGGAAACAGAAAGCAGAGGTCACTGCCGGATTATAGCGGGCGTGGATGGCACGAGTCTAGAAAGCAAGTGATGAACGAATTTGGAGGGCTGAAGAGATCCTATTACATGGACCCTCAACCTTTGAACCTTTTTGAGTGGCACCTTTATGAGTATGAAATTAGCAAGTGCGATGTGTGCGCCTTATACCGGTTGGAACTAAAGCTGGTCGATGGGAAGAAGAGCTCCAAGGCAAAGATAGTAACAGGTGATTCAGTTGCTGATCTTCAGAAGCACATGGGAAGCCTCTCTGCCAAAGGAACAAGACAAGGTGATTTTTTATCCTTGTCAAGACATTGTGAATAGCTCATTCTCACACAAGTGCTGCATTAGAGGCTTGCTTGGGAAGATCACCAACAATTGGTGAGTGATAGAATGAATCATCAGCACAAAGTTGCAGCAATTCAGTCCTCTTGACTCTTTATTTTCTTAATCATGCTAATGTAAGCTACTTATATGGAGGGCACATAATATTGGCTGTGTAATAAATGTTTGTGTCCCTTCATGAGAATTTATCCATTGAAAAAAGGAAAAGAATCTTCGAAAGTCAGCATTCATGATGATATGCCTTGTTTAATTTTTTTCGTTACGAGGTGACTTCTCTATCTAGACATTACAATAGGGCATCCGATACGATTAATTTTGGAGTGATTTAAAATATGGTTGTGGAAT

Coding sequences of Glyma13g21720

Limit To All Plant Sequences

>Glyma13g21720.1   sequence type=CDS   gene model=Glyma13g21720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAAATTTCCAAGAGCAGCTGCAAGTTAGCATCACACAGGCTCTTTAAGGACAAGGCAAGGAACCATGTTGATGATCTGCAGGTGATGTTCTTGGATCTGCAGTTTGCCAGAAAGGAGAGCCGTACTATTGATGCTGCACTTCTGGAGGAGCAAGTCCATCAGATGCTTCGTGAGTGGAAGGCTGAGCTTAACGAGCCATCTCCTGCTTCCTCTTTGCAGCAAGGTCAACATCAACAGGAATTACTATTACTTAAGGAATGCAAACCCTTCACTGTAGGATTTCCCAACTTGGATGGAACTGCTTTAGAGTATCACCAATTTGATATCAATAAGGATATGGATGACAGCTTCTATGCTGGTACAGGTTTTTGTGAGGAAGGTCGTGTTCCTCACATATCTAGCTATCTGCCAAGTGTGTGCCCTCCTCCTTCTGCTTTCTTAGGCCCAAAATGCGCACTTTGGGACTGTCCAAGACCAGTTCAAGGCTTGGACTGGTGTCAAGACTATTGCAGTAGCTTTCACGCCGCTCTAGCTTTAAACGAAGGACCACCAGGGATGACCCCAGTTCTAAGACCTGGGGGAATTGGACTCAAGGATAATTTACTTTTTGCTGCTCTTAGTGCAAAGGCACAAGGAAAAGTTGTTGGAATCCCAGAATGTGAGGGAGCAGCAACCGCAAAATCTCCATGGAATGCACCTGAGCTCTTTGATATATGTGTTCTAGAGGGTGAGACTATTAGGGAGTGGCTATTCTTTGATAAGCCTAGAAGGGCATTTGAGAGTGGAAACAGAAAGCAGAGGTCACTGCCGGATTATAGCGGGCGTGGATGGCACGAGTCTAGAAAGCAAGTGATGAACGAATTTGGAGGGCTGAAGAGATCCTATTACATGGACCCTCAACCTTTGAACCTTTTTGAGTGGCACCTTTATGAGTATGAAATTAGCAAGTGCGATGTGTGCGCCTTATACCGGTTGGAACTAAAGCTGGTCGATGGGAAGAAGAGCTCCAAGGCAAAGATAGTAACAGGTGATTCAGTTGCTGATCTTCAGAAGCACATGGGAAGCCTCTCTGCCAAAGGAACAAGACAAGGTGATTTTTTATCCTTGTCAAGACATTGTGAATAG

>Glyma13g21720.2   sequence type=CDS   gene model=Glyma13g21720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAAATTTCCAAGAGCAGCTGCAAGTTAGCATCACACAGGCTCTTTAAGGACAAGGCAAGGAACCATGTTGATGATCTGCAGGTGATGTTCTTGGATCTGCAGTTTGCCAGAAAGGAGAGCCGTACTATTGATGCTGCACTTCTGGAGGAGCAAGTCCATCAGATGCTTCGTGAGTGGAAGGCTGAGCTTAACGAGCCATCTCCTGCTTCCTCTTTGCAGCAAGGTGGCAGTCTTGGTTCATTCTCTACCGATGTCTATAGGCTATTGCAGCTCTGTGAGGAGGAAGATGATGCCACTAGTCCATTAGTTGCACCTAAGCCTGAACCTAATGATCAGATTATGCAGGCTGGGGCTAAGGTGATAGTCCAAGAGGGTCAACATCAACAGGAATTACTATTACTTAAGGAATGCAAACCCTTCACTGTAGGATTTCCCAACTTGGATGGAACTGCTTTAGAGTATCACCAATTTGATATCAATAAGGATATGGATGACAGCTTCTATGCTGGTACAGGTTTTTGTGAGGAAGGTCGTGTTCCTCACATATCTAGCTATCTGCCAAGTGTGTGCCCTCCTCCTTCTGCTTTCTTAGGCCCAAAATGCGCACTTTGGGACTGTCCAAGACCAGTTCAAGGCTTGGACTGGTGTCAAGACTATTGCAGTAGCTTTCACGCCGCTCTAGCTTTAAACGAAGGACCACCAGGGATGACCCCAGTTCTAAGACCTGGGGGAATTGGACTCAAGGATAATTTACTTTTTGCTGCTCTTAGTGCAAAGGCACAAGGAAAAGTTGTTGGAATCCCAGAATGTGAGGGAGCAGCAACCGCAAAATCTCCATGGAATGCACCTGAGCTCTTTGATATATGTGTTCTAGAGGGTGAGACTATTAGGGAGTGGCTATTCTTTGATAAGCCTAGAAGGGCATTTGAGAGTGGAAACAGAAAGCAGAGGTCACTGCCGGATTATAGCGGGCGTGGATGGCACGAGTCTAGAAAGCAAGTGATGAACGAATTTGGAGGGCTGAAGAGATCCTATTACATGGACCCTCAACCTTTGAACCTTTTTGAGTGGCACCTTTATGAGTATGAAATTAGCAAGTGCGATGTGTGCGCCTTATACCGGTTGGAACTAAAGCTGGTCGATGGGAAGAAGAGCTCCAAGGCAAAGATAGTAACAGGTGATTCAGTTGCTGATCTTCAGAAGCACATGGGAAGCCTCTCTGCCAAAGGAACAAGACAAGGTGATTTTTTATCCTTGTCAAGACATTGTGAATAG

Predicted protein sequences of Glyma13g21720

Limit To All Plant Sequences

>Glyma13g21720.1   sequence type=predicted peptide   gene model=Glyma13g21720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKISKSSCKLASHRLFKDKARNHVDDLQVMFLDLQFARKESRTIDAALLEEQVHQMLREWKAELNEPSPASSLQQGQHQQELLLLKECKPFTVGFPNLDGTALEYHQFDINKDMDDSFYAGTGFCEEGRVPHISSYLPSVCPPPSAFLGPKCALWDCPRPVQGLDWCQDYCSSFHAALALNEGPPGMTPVLRPGGIGLKDNLLFAALSAKAQGKVVGIPECEGAATAKSPWNAPELFDICVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNLFEWHLYEYEISKCDVCALYRLELKLVDGKKSSKAKIVTGDSVADLQKHMGSLSAKGTRQGDFLSLSRHCE*

>Glyma13g21720.2   sequence type=predicted peptide   gene model=Glyma13g21720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKISKSSCKLASHRLFKDKARNHVDDLQVMFLDLQFARKESRTIDAALLEEQVHQMLREWKAELNEPSPASSLQQGGSLGSFSTDVYRLLQLCEEEDDATSPLVAPKPEPNDQIMQAGAKVIVQEGQHQQELLLLKECKPFTVGFPNLDGTALEYHQFDINKDMDDSFYAGTGFCEEGRVPHISSYLPSVCPPPSAFLGPKCALWDCPRPVQGLDWCQDYCSSFHAALALNEGPPGMTPVLRPGGIGLKDNLLFAALSAKAQGKVVGIPECEGAATAKSPWNAPELFDICVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNLFEWHLYEYEISKCDVCALYRLELKLVDGKKSSKAKIVTGDSVADLQKHMGSLSAKGTRQGDFLSLSRHCE*

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