Glyma13g21700 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma13g21700): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma13g21700): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma13g21700

Feature Type:	gene_model
Chromosome:	Gm13
Start:	25271110
stop:	25273711
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g21700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G27690	AT	Annotation by Michelle Graham. TAIR10: cytochrome P450, family 94, subfamily C, polypeptide 1 \| chr2:11809373-11810860 FORWARD LENGTH=495	SoyBase	E_val: 0	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0043231	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016705	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SoyBase	N/A	ISS
GO:0018685	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alkane 1-monooxygenase activity	SoyBase	N/A	ISS
GO:0019825	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxygen binding	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
KOG0157	KOG	Cytochrome P450 CYP4/CYP19/CYP26 subfamilies	JGI		ISS
PTHR24296	Panther	FAMILY NOT NAMED	JGI		ISS
PF00067	PFAM	Cytochrome P450	JGI		ISS
UniRef100_B9T5M5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9T5M5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LZG9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LZG9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g21700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g21700 not represented in the dataset	Glyma13g21700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g21700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g212000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g21700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g21700

Limit To All Plant Sequences

>Glyma13g21700.2   sequence type=CDS   gene model=Glyma13g21700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACTCATACCATCACTACCTACCTCTTCTCCGTTATTGCAGTTCTTCATCAACCGCGTTTGTTTTTCTTATCTACTCTTCTCAATGATCACCATCATCCTCTTCCTCATCATCATCATCGCAATCGCGCGTCTGTTAAAGAGCTTTTTCTGCAGCTGCGAAACGTGCCAGACATACCTCACTTCAAGCTGGTCCGAAACCTTCGACAACCTCTGCGACTGGTACGCTCACCTCCTCCGAAACTCGCCGAACAAAACCATCCACATCCACGTTCTTCGGAACACGATCACCGCCAACGCGGAGAACGTGGAGTACATACTCAAGACTAAGTTTGAAAACTTCCCCAAGGGAAAACCCTTCTCTGCGATCCTCGGTGACTTTCTCGGCAAAGGAGTCTTCAACGTCGACGGCGACGCGTGGCGTTTCCAGAAGAAGATGGCGAGCCTACACCTCAACAACAACTCCGTAGTAGCCTCCTTCGCCTTCGAAATCGTCAACGACGAAATCAAGAACAGGCTCACCCCGCTTCTTCTAATGAACCAGAAAAACGGCGTCGTGCTGGACCTGCAAGACGTGTTCCAGAGATTCTCCTTCGACTGCATTTGCAGATTCTCCTTCGGGCTGGACCCAGATTTCTGTCTAGAATCTGGGTCCATGCTCGTGTTTGCGAAAAGCTTCGATCTTGCGTCGAAGCTTTCCGCGGAGAGGGCGACAGCTGTGTCGCCCTACGTCTGGAAGGCGAAGAGGCTGTTGAACCTGGGAAGCGAGAAACGGCTCAAGAAAGCCCTTAGAGTGATTAACGCGCTGGCCAAAGAGGTCATAAAGCAAAGGCGCGAAAAGGGTTTCTCCGAAAACAAAGATTTGTTGTCAAGATTCATGAACACGATCCACGACGATGACACGTATTTACGAGACGTTGTCGTGAGTTTTTTATTGGCGGGTCGTGACACCGTGGCTTCGGCACTCACGAGCTTCTTTTATCTCTTGGGGAAGCACCCTGAAGTTGAATCGTTGATTCGCGATGAAGCAGATCGCGTAATTGGGCATGACAAGGATCTCACAAGCTTCGAAGAGCTTAAGCAATTGCACTATTTGCAAGCTGCGACACACGAAAGCATGAGGCTTTTTCCACCGATTCAGTTTGACTCAAAGTTTTGCTTGGAGGACGATGTGTTACCCGATGGGACAAAAGTGGAGAGTGGAACTAGGGTTACTTACCACCCCTACGCGATGGGGAGGTTGGAGGAGATATGGGGTTGTGATTGTTTGGAGTTTCGGCCACAAAGGTGGCTGAAGGATGGGGTGTTTCAACCCATGAATCCGTTCGAGTACCCGGTTTTTCAAGCGGGGTTGAGGGTGTGTGTAGGGAAGGAAGTGGCTCTGATGGAGATGAAGAGTGTGGCAGTTTCGTTGCTGAGGAAGTTCCACATCGAGTTGCTGGCACCCTTGTCTTTTGGGAACCCTCGCTTCTCTCCGGGGCTCACTGCCACTTTTAGTTTTGGCCTTCCCGTGATGGTTCGTGAAAGAGGAACTACAACAACCACCAAACCATCAAAAGGAGTCTAA

Predicted protein sequences of Glyma13g21700

Limit To All Plant Sequences

>Glyma13g21700.2   sequence type=predicted peptide   gene model=Glyma13g21700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELIPSLPTSSPLLQFFINRVCFSYLLFSMITIILFLIIIIAIARLLKSFFCSCETCQTYLTSSWSETFDNLCDWYAHLLRNSPNKTIHIHVLRNTITANAENVEYILKTKFENFPKGKPFSAILGDFLGKGVFNVDGDAWRFQKKMASLHLNNNSVVASFAFEIVNDEIKNRLTPLLLMNQKNGVVLDLQDVFQRFSFDCICRFSFGLDPDFCLESGSMLVFAKSFDLASKLSAERATAVSPYVWKAKRLLNLGSEKRLKKALRVINALAKEVIKQRREKGFSENKDLLSRFMNTIHDDDTYLRDVVVSFLLAGRDTVASALTSFFYLLGKHPEVESLIRDEADRVIGHDKDLTSFEELKQLHYLQAATHESMRLFPPIQFDSKFCLEDDVLPDGTKVESGTRVTYHPYAMGRLEEIWGCDCLEFRPQRWLKDGVFQPMNPFEYPVFQAGLRVCVGKEVALMEMKSVAVSLLRKFHIELLAPLSFGNPRFSPGLTATFSFGLPVMVRERGTTTTTKPSKGV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain