Glyma13g21580 - SoyBase

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Report for Sequence Feature Glyma13g21580

Feature Type:	gene_model
Chromosome:	Gm13
Start:	25168430
stop:	25172535
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g21580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03670	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36420.1); Has 700 Blast hits to 624 proteins in 104 species: Archae - 0; Bacteria - 18; Metazoa - 333; Fungi - 60; Plants - 73; Viruses - 24; Other Eukaryotes - 192 (source: NCBI BLink). \| chr5:947311-949898 FORWARD LENGTH=516	SoyBase	E_val: 7.00E-54	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009888	GO-bp	Annotation by Michelle Graham. GO Biological Process: tissue development	SoyBase	N/A	ISS
GO:0030154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell differentiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_UPI000233D067	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D067 related cluster n=1 Tax=unknown RepID=UPI000233D067	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g21580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g21580

Paralog	Evidence	Comments
Glyma10g07773	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g21580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g152100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g21580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g21580

Limit To All Plant Sequences

>Glyma13g21580.1   sequence type=CDS   gene model=Glyma13g21580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGAAGCACTTGCGGGAGCTCCTTAAAGAGGATCAAGAACCCTTCCTTCTGAAACACTACATTTGGGAGCGTCGCAGGCAGCTCAAAAGACCTTCCCCAAACAGCCCTTTACAACAACAACTGAAAAAGAAAAACTCAAACTTCCCACTTAACAAATGCTTCCTCACTTCCCTACAAAACGCCACAAAATCCCCACTCTTATTGTCTCCAAAGAATAGTACTTCTCCCCTCCTCAGACCCTCCAACGCCAAAACCGCGTCGCTCCTCCTCGAAGCCGCCCTCAGAATCCACAACAAAAACGCGAAACCGAAGAAGCCCAAACCAAACAGCGCCTTGGGCATCTTCGGCTCGCTCTTCAAGAAACTAACCAACCGAAAGAGGGAAACATTAGAGGGTGTTCTTGTTAAGGTTAAAGACAGCGACGACGATGTTGTTGTGGTGGGATCCTGTGAGGTCGGGTTCAGTTGTTCCTGCAACGGAAGGCCAAGCAGTGCTGTGTGGTCGGAGAGCAACGAGGATAAATCGTTGGACTTGGAATCTTCTAGTAGTGGCCACTCATTTGATGACTCTGTTGCTGAAGAGATTGAGTTTCTCAACAAACGCAAACATGTTACGGATTCTGCTTGTTTTGACGACGATGATGATCACGGCTTCTTCTGTGAAAGCCCGTTCCGTTTCTCCCTCCAACGCAGCCCCGGCTACTCCGGCCGCCACACCCCGGATTTTTCTTCGCCGGCTGCGTCTCCATGTCGCCGCAAAACTGAGGACAAAAAAATTAATGGTGCTGATGGCGTCAACAAATTCCAATCAGGGGAAGAAGAGGAAGATAAGGAACAGTGCAGTCCAGTATCTGTTTTAGACCCACCCTTCGATGACGATGATGATGGGCATGATGATGACCATGAAGGGGATGGTTTTGATTTGGACTGTAGCTATGCCAATGTACAAAGAACTAAGCAGCATCTACTAAACAGACTTCGTAGATTCGAGAAACTTGCCGAGTTAGATCCGGTAGAACTTGAGAAGAGAATGCTGGATCAAGACCGCGAGTACAAAACATTTACTGAAGAGGACGATGATTGTGAAGACGGCGACAGCGAAACAGCATGCAAAGAAAATGCTCTGAGAGGAGAATTAATGTTTGAAATCCTCTGCCATTCAAGTGTTGAAGACACACAACAGCAAACTCCAGAAGACCTCAAGAGGCTGGTCTATGATCTCATCAAGGAGGAAGAGAGGGAAGTTAATAATTCTTCAGACATGGTGATAAGAAGGGTTCTTAGGAGGCTAGAATTGTGGAAAGAAGTGGAGTCCAACACTATTGATATGATGATAGAAGAGGACTTCTCTAGAGAGCAATGCAGGTGGAAGAAAAATGCTGAGCACACAAGTGAGCTAGCTGTGGAACTTGAACTTGCTATCTTTTGCTTTCTAGTGGAGGAGCTTTCAGAGGAACTAGTGTGTTAA

Predicted protein sequences of Glyma13g21580

Limit To All Plant Sequences

>Glyma13g21580.1   sequence type=predicted peptide   gene model=Glyma13g21580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEKHLRELLKEDQEPFLLKHYIWERRRQLKRPSPNSPLQQQLKKKNSNFPLNKCFLTSLQNATKSPLLLSPKNSTSPLLRPSNAKTASLLLEAALRIHNKNAKPKKPKPNSALGIFGSLFKKLTNRKRETLEGVLVKVKDSDDDVVVVGSCEVGFSCSCNGRPSSAVWSESNEDKSLDLESSSSGHSFDDSVAEEIEFLNKRKHVTDSACFDDDDDHGFFCESPFRFSLQRSPGYSGRHTPDFSSPAASPCRRKTEDKKINGADGVNKFQSGEEEEDKEQCSPVSVLDPPFDDDDDGHDDDHEGDGFDLDCSYANVQRTKQHLLNRLRRFEKLAELDPVELEKRMLDQDREYKTFTEEDDDCEDGDSETACKENALRGELMFEILCHSSVEDTQQQTPEDLKRLVYDLIKEEEREVNNSSDMVIRRVLRRLELWKEVESNTIDMMIEEDFSREQCRWKKNAEHTSELAVELELAIFCFLVEELSEELVC*

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