Glyma13g21500 - SoyBase

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Report for Sequence Feature Glyma13g21500

Feature Type:	gene_model
Chromosome:	Gm13
Start:	25062294
stop:	25065318
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g21500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G23620	AT	Annotation by Michelle Graham. TAIR10: Ribosomal RNA processing Brix domain protein \| chr3:8480147-8481873 FORWARD LENGTH=314	SoyBase	E_val: 2.00E-155	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3031	KOG	Protein required for biogenesis of the ribosomal 60S subunit	JGI		ISS
PTHR12728	Panther	BRIX DOMAIN CONTAINING PROTEIN	JGI		ISS
PF04427	PFAM	Brix domain	JGI		ISS
UniRef100_H9A0F8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Brix domain-containing protein n=1 Tax=Nicotiana benthamiana RepID=H9A0F8_NICBE	SoyBase	E_val: 2.00E-166	ISS
UniRef100_I1LZF7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZF7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g21500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g21500

Paralog	Evidence	Comments
Glyma10g07630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g21500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g151300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g21500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g21500

Limit To All Plant Sequences

>Glyma13g21500.1   sequence type=CDS   gene model=Glyma13g21500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGAAATCAAAACCGCCAAGACCCGCAAGGGCAAGCGGGAGCTCGAGAAGCGCGCCCCCAAGCTCGTGGAATCGGGGAAGAAGACGCTGATCCTGCACGGAACGAAGACCAGCGGCGTGCTGAACGCCGTGCTCGCGCAGATTTATCATTTGAAGAAGGACAGCGCCGTCAAGTACAGCCGCAAGAACGAGAACGTCAAGCCTTTCGAGGCCGGCGGCGAGACTTCGCTCGAGTTTTTCTCTCTCAAAACCGATTGCAGCGTATTTGTGTATGGATCTCACTCGAAGAAGCGGCCTGATAACCTTGTTATAGGGAGAACTTATGATCATCATATCTTTGATTTAGTGGAGGTTGGAGTTGAAAATTTTAAACCCATGGAGTCTTTTAGTTATAATAAGAAGTTGGCTCCTAAGGAAGGGTCAAAGCCTTTTATTGTTTTTATTGGAGAAGGATTTGAGGCTGTGGAAGAGCTAAAGCATTTGAAGGAAGTTTTGCTCGATCTTCTTCGTGGTGAGGTTGTGGAGAATCTAAATCTTGCTGGAGTGGATCGTGCATATGTATGTGCTGCCCTGTCTCCGAATCGAGTGTTTTTTACTCACTGCGCATTGAGACTGAAAAAGTCAGGCACTGTTGTACCAAGAATGGAATTGGAAGAAGTTGGCCCGTCCATGGATTTTGTTGTTCGTCGGCATCGTCCTCCTAATGAAAGTTTGAGGAAGGAAGCAATGAAAACATCGAGGGAGAAGCCAAAGAAAAAGGAGAAGAATGTTAAAAGGGACGAATTACAGGGAAAGATTGGAAGTATTTATATCCCAGATCAGAAGGTTGGAGAAACTCCTTTACCTTACAAAGCAAAAGGAGTGAAGAGGGAGCGCCAAGAAGCCAAGCGGAAAAATGAGAGTGATGGAAGTGCTTCAAAACGGAAGAAGGAAGATTCTTGA

Predicted protein sequences of Glyma13g21500

Limit To All Plant Sequences

>Glyma13g21500.1   sequence type=predicted peptide   gene model=Glyma13g21500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEIKTAKTRKGKRELEKRAPKLVESGKKTLILHGTKTSGVLNAVLAQIYHLKKDSAVKYSRKNENVKPFEAGGETSLEFFSLKTDCSVFVYGSHSKKRPDNLVIGRTYDHHIFDLVEVGVENFKPMESFSYNKKLAPKEGSKPFIVFIGEGFEAVEELKHLKEVLLDLLRGEVVENLNLAGVDRAYVCAALSPNRVFFTHCALRLKKSGTVVPRMELEEVGPSMDFVVRRHRPPNESLRKEAMKTSREKPKKKEKNVKRDELQGKIGSIYIPDQKVGETPLPYKAKGVKRERQEAKRKNESDGSASKRKKEDS*

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