Glyma13g21480 - SoyBase

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Report for Sequence Feature Glyma13g21480

Feature Type:	gene_model
Chromosome:	Gm13
Start:	25041603
stop:	25051364
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g21480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03730	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr5:974958-979660 REVERSE LENGTH=821	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009686	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0010105	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0010182	GO-bp	Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0048510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of timing of transition from vegetative to reproductive phase	SoyBase	N/A	ISS
GO:0071281	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion	SoyBase	N/A	ISS
GO:2000035	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of stem cell division	SoyBase	N/A	ISS
GO:2000069	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of post-embryonic root development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005789	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004712	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine/tyrosine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0192	KOG	Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs	JGI		ISS
PTHR23257	Panther	SERINE-THREONINE PROTEIN KINASE	JGI		ISS
PTHR23257:SF80	Panther	MAP3K DELTA-1 PROTEIN KINASE	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_A2T3V4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ethylene control element variant n=1 Tax=Malus x domestica RepID=A2T3V4_MALDO	SoyBase	E_val: 0	ISS
UniRef100_I1LZF4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZF4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g21480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g21480

Paralog	Evidence	Comments
Glyma10g07610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g21480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g151100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g21480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g21480

Limit To All Plant Sequences

>Glyma13g21480.1   sequence type=CDS   gene model=Glyma13g21480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAAATGCCTGCCAGAAGATCCAACTACTCGCTCCTCAGCCAAATTCCCGACGACCAGTTCTCCGCCTCCGCCGCCCCCTCCTCCTCCGGCGACGGCAAGTCCGCCCGCGCCGGTAAGTCCGACCGCGCCGCCTTCGACTGGGACCTCGTCGCCGATCACCGGGCCGCCAACCGGATCGGAAACCTCTACTCCTCGATCGGCCTGCAGCGCCAGTCCAGCGGGAGCAGCTACGGCGAGAGCTCGCTCTCCGGCGGCGGCGACTTTTATGCTCCGACGCTCTCCACGGCGGCGGTCAGCGACGTCGACGCCTTCGGATACCTCCACGACGAGCGGAGCAAGTTCTCGGAGGTGGCGCCGGCGAGGATCGCCGGCTCCTCCTCCGGGAAGAGCTGGGCGCAGCAGACGGAGGAGAGCTACCAGCTGCAGCTTGCGCTCGCACTGCGCCTCTCGTTGCACGCCACGTGCGCCGATGATCCCAATTTCCTCGATCCGGTGCCGGACGACGCCGCGCCGCGGCTCTCGTCGTCGGCCGAGGCGGTTTCGCATAGGTTTTGGGTGAATGGCTGCCTATCATACTCTGACAAAATTCCAGATGGCTTTTACCTGATTCATGGGATGAATTCCTTTGTCTGGACCTTGTGCACTGATCTGCATGAAAATGGCCGAATTCCATCAGTTGATATGCTGAAGTCTGTGAATCCCTGCGTCGTTTCTTCACTTGAAGTAGTTATGGTGGATCGACGCAGTGACCCCAGCTTAAGAGATCTGCAAAATAATGTTCATAACATTTCTTGTACTAGCATAACAACAACAGATGTTGTAGATAAACTTTCCAAGCTGGTTTGCAACCGTATGGGTGGTTCAGCTTCTGTTGGGGAAGATCACTTTTTTTCCATCTGGAGGGATTGCAGTAATGATCTGAAAGATTGCTTAGGATCTGTTGTTATTCCCATAGGTAGTCTATCTGTTGGCCTCTGCCGGCATCGTGCTATATTATTCAAAGTACTAGCTGACGCCATTGATTTACCATGTCGAATTGCTAAGGGCTGTAAATATTGCAAAAGGGATGATGCTACATCTTGTCTTGTTCGATTTGGGCTTGAGAGGGAGTATCTTGTTGATTTAATTGGAAAGCCAGGAAACTTATCTGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGCTTTCCACGACTTAAACCGGCTGAACCTACCATTGATTTCAGGTCATTGGCCAAACAGTATTTCTCGGATTGTGTGTCTCTTGAGCTTGTCTTCGACAACAACTCTGCAGAACAGTTTGATGGGAAGTGCAAAGACAGCAGTAACCCTAGGCCAATTTCGTCTGATAGCAATAGAAGTTCTCACCTTCCTCTGCATCCGCAAGATTCTCATCCAAGCTCACGTGAACAAGGTTCTGAAACATATCAATCATGTAACGCTCCTCAGAACATTGTAGACTCAACTCTGGGAAAGTATCCACCACCAATAAAGCATAAGCGTCCTGCTGGTATACCAACCCCATTAGCACTTACAAATACTAATGATGACATGATTGAGGGCAAGAGGTTTGTTGAAGGAAGTCAACTGATTCCTAGCAAACATGCTCGAGAGCTTAACTTTGACATGGAGGATTTGGACATACCATGGAGTGATCTTGTCCTAAGAGAGAAAATAGGGTCAGGTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGGATGTTGCTGTGAAAATTTTGATGGAACAGGATTTTCATGCTGAGCGCTTCAAGGAATTCCTAAGGGAGGTTGCAATAATGAAACGTTTACGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTATCAATTGTCACGGAATATTTATCTAGGGGTAGCTTATATAGGCTTTTGCATAGATCTGGCGCCAAAGAAGTATTGGATGAGAGGCGTAGGCTTGGTATGGCTTATGACGTGGCAAAGGGGATGAATTATCTTCATAAACGTAATCCCCCCATTGTTCATAGAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAGGTTTGTGATTTTGGGCTTTCACGTCTGAAGGCCAATACGTTTCTCTCATCCAAGTCAGCTGCTGGGACTCCTGAGTGGATGGCTCCAGAGGTTCTTTGTGATGAGCCATCGAATGAGAAGTCCGATGTTTACAGCTTTGGTGTAATCTTATGGGAGCTTGCAACATTGCAACAGCCATGGGTTAATTTAAATCCAGCACAGGTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTATGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCCATTGCTCAAACCCCCTACACCTCAACCTGGTCGTCCAAGCATGCCATTACTGACCTGA

Predicted protein sequences of Glyma13g21480

Limit To All Plant Sequences

>Glyma13g21480.1   sequence type=predicted peptide   gene model=Glyma13g21480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMEMPARRSNYSLLSQIPDDQFSASAAPSSSGDGKSARAGKSDRAAFDWDLVADHRAANRIGNLYSSIGLQRQSSGSSYGESSLSGGGDFYAPTLSTAAVSDVDAFGYLHDERSKFSEVAPARIAGSSSGKSWAQQTEESYQLQLALALRLSLHATCADDPNFLDPVPDDAAPRLSSSAEAVSHRFWVNGCLSYSDKIPDGFYLIHGMNSFVWTLCTDLHENGRIPSVDMLKSVNPCVVSSLEVVMVDRRSDPSLRDLQNNVHNISCTSITTTDVVDKLSKLVCNRMGGSASVGEDHFFSIWRDCSNDLKDCLGSVVIPIGSLSVGLCRHRAILFKVLADAIDLPCRIAKGCKYCKRDDATSCLVRFGLEREYLVDLIGKPGNLSEPDSLLNGPSSISFSSPLRFPRLKPAEPTIDFRSLAKQYFSDCVSLELVFDNNSAEQFDGKCKDSSNPRPISSDSNRSSHLPLHPQDSHPSSREQGSETYQSCNAPQNIVDSTLGKYPPPIKHKRPAGIPTPLALTNTNDDMIEGKRFVEGSQLIPSKHARELNFDMEDLDIPWSDLVLREKIGSGSFGTVHRAEWNGSDVAVKILMEQDFHAERFKEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHRSGAKEVLDERRRLGMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLCDEPSNEKSDVYSFGVILWELATLQQPWVNLNPAQVVAAVGFKRKRLEIPHDVNPQVAALIEACWAYEPWKRPSFASIMDSLRPLLKPPTPQPGRPSMPLLT*

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