SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G03730 | AT | Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr5:974958-979660 REVERSE LENGTH=821 | SoyBase | E_val: 0 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0009686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0009750 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus | SoyBase | N/A | ISS |
| GO:0010105 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of ethylene mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0048510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of timing of transition from vegetative to reproductive phase | SoyBase | N/A | ISS |
| GO:0071281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion | SoyBase | N/A | ISS |
| GO:2000035 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of stem cell division | SoyBase | N/A | ISS |
| GO:2000069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of post-embryonic root development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005789 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0004712 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine/tyrosine kinase activity | SoyBase | N/A | ISS |
| GO:0004713 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0192 | KOG | Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs | JGI | ISS | |
| PTHR23257 | Panther | SERINE-THREONINE PROTEIN KINASE | JGI | ISS | |
| PTHR23257:SF80 | Panther | MAP3K DELTA-1 PROTEIN KINASE | JGI | ISS | |
| PF07714 | PFAM | Protein tyrosine kinase | JGI | ISS | |
| UniRef100_A2T3V4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ethylene control element variant n=1 Tax=Malus x domestica RepID=A2T3V4_MALDO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LZF4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZF4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g21480 not represented in the dataset |
Glyma13g21480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g07610 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g151100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g21480.1 sequence type=CDS gene model=Glyma13g21480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGAAATGCCTGCCAGAAGATCCAACTACTCGCTCCTCAGCCAAATTCCCGACGACCAGTTCTCCGCCTCCGCCGCCCCCTCCTCCTCCGGCGACGGCAAGTCCGCCCGCGCCGGTAAGTCCGACCGCGCCGCCTTCGACTGGGACCTCGTCGCCGATCACCGGGCCGCCAACCGGATCGGAAACCTCTACTCCTCGATCGGCCTGCAGCGCCAGTCCAGCGGGAGCAGCTACGGCGAGAGCTCGCTCTCCGGCGGCGGCGACTTTTATGCTCCGACGCTCTCCACGGCGGCGGTCAGCGACGTCGACGCCTTCGGATACCTCCACGACGAGCGGAGCAAGTTCTCGGAGGTGGCGCCGGCGAGGATCGCCGGCTCCTCCTCCGGGAAGAGCTGGGCGCAGCAGACGGAGGAGAGCTACCAGCTGCAGCTTGCGCTCGCACTGCGCCTCTCGTTGCACGCCACGTGCGCCGATGATCCCAATTTCCTCGATCCGGTGCCGGACGACGCCGCGCCGCGGCTCTCGTCGTCGGCCGAGGCGGTTTCGCATAGGTTTTGGGTGAATGGCTGCCTATCATACTCTGACAAAATTCCAGATGGCTTTTACCTGATTCATGGGATGAATTCCTTTGTCTGGACCTTGTGCACTGATCTGCATGAAAATGGCCGAATTCCATCAGTTGATATGCTGAAGTCTGTGAATCCCTGCGTCGTTTCTTCACTTGAAGTAGTTATGGTGGATCGACGCAGTGACCCCAGCTTAAGAGATCTGCAAAATAATGTTCATAACATTTCTTGTACTAGCATAACAACAACAGATGTTGTAGATAAACTTTCCAAGCTGGTTTGCAACCGTATGGGTGGTTCAGCTTCTGTTGGGGAAGATCACTTTTTTTCCATCTGGAGGGATTGCAGTAATGATCTGAAAGATTGCTTAGGATCTGTTGTTATTCCCATAGGTAGTCTATCTGTTGGCCTCTGCCGGCATCGTGCTATATTATTCAAAGTACTAGCTGACGCCATTGATTTACCATGTCGAATTGCTAAGGGCTGTAAATATTGCAAAAGGGATGATGCTACATCTTGTCTTGTTCGATTTGGGCTTGAGAGGGAGTATCTTGTTGATTTAATTGGAAAGCCAGGAAACTTATCTGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGCTTTCCACGACTTAAACCGGCTGAACCTACCATTGATTTCAGGTCATTGGCCAAACAGTATTTCTCGGATTGTGTGTCTCTTGAGCTTGTCTTCGACAACAACTCTGCAGAACAGTTTGATGGGAAGTGCAAAGACAGCAGTAACCCTAGGCCAATTTCGTCTGATAGCAATAGAAGTTCTCACCTTCCTCTGCATCCGCAAGATTCTCATCCAAGCTCACGTGAACAAGGTTCTGAAACATATCAATCATGTAACGCTCCTCAGAACATTGTAGACTCAACTCTGGGAAAGTATCCACCACCAATAAAGCATAAGCGTCCTGCTGGTATACCAACCCCATTAGCACTTACAAATACTAATGATGACATGATTGAGGGCAAGAGGTTTGTTGAAGGAAGTCAACTGATTCCTAGCAAACATGCTCGAGAGCTTAACTTTGACATGGAGGATTTGGACATACCATGGAGTGATCTTGTCCTAAGAGAGAAAATAGGGTCAGGTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGGATGTTGCTGTGAAAATTTTGATGGAACAGGATTTTCATGCTGAGCGCTTCAAGGAATTCCTAAGGGAGGTTGCAATAATGAAACGTTTACGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTATCAATTGTCACGGAATATTTATCTAGGGGTAGCTTATATAGGCTTTTGCATAGATCTGGCGCCAAAGAAGTATTGGATGAGAGGCGTAGGCTTGGTATGGCTTATGACGTGGCAAAGGGGATGAATTATCTTCATAAACGTAATCCCCCCATTGTTCATAGAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAGGTTTGTGATTTTGGGCTTTCACGTCTGAAGGCCAATACGTTTCTCTCATCCAAGTCAGCTGCTGGGACTCCTGAGTGGATGGCTCCAGAGGTTCTTTGTGATGAGCCATCGAATGAGAAGTCCGATGTTTACAGCTTTGGTGTAATCTTATGGGAGCTTGCAACATTGCAACAGCCATGGGTTAATTTAAATCCAGCACAGGTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTATGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCCATTGCTCAAACCCCCTACACCTCAACCTGGTCGTCCAAGCATGCCATTACTGACCTGA
>Glyma13g21480.1 sequence type=predicted peptide gene model=Glyma13g21480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMEMPARRSNYSLLSQIPDDQFSASAAPSSSGDGKSARAGKSDRAAFDWDLVADHRAANRIGNLYSSIGLQRQSSGSSYGESSLSGGGDFYAPTLSTAAVSDVDAFGYLHDERSKFSEVAPARIAGSSSGKSWAQQTEESYQLQLALALRLSLHATCADDPNFLDPVPDDAAPRLSSSAEAVSHRFWVNGCLSYSDKIPDGFYLIHGMNSFVWTLCTDLHENGRIPSVDMLKSVNPCVVSSLEVVMVDRRSDPSLRDLQNNVHNISCTSITTTDVVDKLSKLVCNRMGGSASVGEDHFFSIWRDCSNDLKDCLGSVVIPIGSLSVGLCRHRAILFKVLADAIDLPCRIAKGCKYCKRDDATSCLVRFGLEREYLVDLIGKPGNLSEPDSLLNGPSSISFSSPLRFPRLKPAEPTIDFRSLAKQYFSDCVSLELVFDNNSAEQFDGKCKDSSNPRPISSDSNRSSHLPLHPQDSHPSSREQGSETYQSCNAPQNIVDSTLGKYPPPIKHKRPAGIPTPLALTNTNDDMIEGKRFVEGSQLIPSKHARELNFDMEDLDIPWSDLVLREKIGSGSFGTVHRAEWNGSDVAVKILMEQDFHAERFKEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHRSGAKEVLDERRRLGMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLCDEPSNEKSDVYSFGVILWELATLQQPWVNLNPAQVVAAVGFKRKRLEIPHDVNPQVAALIEACWAYEPWKRPSFASIMDSLRPLLKPPTPQPGRPSMPLLT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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