Glyma13g21460 - SoyBase

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Report for Sequence Feature Glyma13g21460

Feature Type:	gene_model
Chromosome:	Gm13
Start:	25010135
stop:	25022104
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g21460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36490	AT	Annotation by Michelle Graham. TAIR10: demeter-like 1 \| chr2:15308259-15314272 REVERSE LENGTH=1393	SoyBase	E_val: 0	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0006284	GO-bp	Annotation by Michelle Graham. GO Biological Process: base-excision repair	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006342	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing	SoyBase	N/A	ISS
GO:0031936	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of chromatin silencing	SoyBase	N/A	ISS
GO:0080111	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA demethylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003906	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0019104	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA N-glycosylase activity	SoyBase	N/A	ISS
PTHR10359	Panther	A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III	JGI		ISS
PTHR10359:SF3	Panther	A/G-SPECIFIC ADENINE GLYCOSYLASE	JGI		ISS
PF00730	PFAM	HhH-GPD superfamily base excision DNA repair protein	JGI		ISS
UniRef100_F6KFZ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Repressor of gene silencing 1 n=1 Tax=Gossypium hirsutum RepID=F6KFZ2_GOSHI	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D062	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D062 related cluster n=1 Tax=unknown RepID=UPI000233D062	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g21460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g21460

Paralog	Evidence	Comments
Glyma10g07601	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g21460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g151000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g21460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g21460

Limit To All Plant Sequences

>Glyma13g21460.2   sequence type=CDS   gene model=Glyma13g21460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTTGGGGAAATGGACAGAAAGGAGCCACAAGTTGAGGTTCCTTGGAGCCCCGGCACCCCTATTAAGGCCGTTCCTATGAAACCAATGCCGATCTGCTCGCCTGGGGAGAGAAATCAAATGGGTCATCATGCAAATGGAGCAGTTGCATGTGATGAATTTTCACACGGCCAAGACAAAATTGGTGGGTTAGGTGATGGGTCAAATGTTGCCACTGACGGTGGCAAAACTTGTGAACCGACAGATTCGGATGCTGTTTCCAACTATAGCAAACTTGGGTTTTGTGAACAATTGTTTGCGGTTGAGGCTGAATCGAGGAACTCTAGTGTGACACAAGGGAATAATGATGGATTGAAGAATCCTTTTGTTCCTTCATTCATCCTTGACAATGTCCAAGACCCTCAGGAAACATACATTGCTTGCTGTAGCATGAAAACTTCACAGGATACCCTATTTACACTTGACAATGCCAACAAAGAAGGCATAAAAATAGCATCAATGCAAGTCAATATGGAAGAAAAGGATCCAGGAGGGGAAGAGAGAAATGCCCCTGCCAATAAGCTTGACAATAATGTACCGCCAAACAGCAAAGAACTCTGTGACCCTGCAATGGAATTTGCTGCTGTTTCTTCACCATTGAAAGAGAATCACAACCCAGATAAGGGAAGCAGTCATGATACTGATCTTAATAAAACACCACAACAAAAACCAAGGAGAAGAAAGCACCGTCCCAAGGTCATCAAAGAAGGCAAACCCAAAAGAACTCGGAAGCCTGCTACCCCAAAGCCTGTTCAACCAAAAGAAAACACACCTGTCAAGAGGAAGTATGTGAGAAAGAATACAGTGAACAAGACTTCTACTCCTCCTACCGAAGAGGCTAGGGAATTGAGTAAAGAAATGTCTTGTAAAAGGTCCTTAAATTTCGACATAGGAACAACAGATGAAAGTTCTGCTGCCATAGATAATACAACTGCACTATTGGGAAAAGAAAATGGTATTCTCGTTCAAGAAACAAATGTAGGTTCTGCATTTGATCTAAACACGTCCATGAAGCAGGCATCAAACAGTTACATGTCACTACCAGAAGACAAACAAGCCCTTAATACATCTCCTTCGAGAAGAAAAAGCTCAGGGACAAAGCCAGAGGAAAACACGCCTCCCAAGAGGAAGTATGTGAGAAGGAAAGGAGTGAACAAGACTTCTGCTCCTCCAATAGAAGTTCCTGGAAATTTGACTAAAGAAACAATGTCTGCATCTGCCCAAACATCATGCACAGAGTCCATATTTGATGAAAGAGCAAGAGATCAAAGTTATACAGTCAAAGAGAATCCAACTGGGCATCCAGGCAGTGAAATTGGTGTACTCATGAAGGAAATGAATGTGGGCCTTGCCTATGATTTAAACACTTCCAGGAAGCAGGCATTAAATGATGACGCGACATTACCTAAGGACACACAAGCCCCAAGTTCATCTTCAAAAATCAATCTCCCTGGGACAAAGAGAAAAGAAAACCTGACTGGCAAGAGGAAGAATGCGGGGAAAAAAGGATCAAATCCGTCTCCTATTCCTCCAACAGAAATTACAGAATTGACTGAAGCAAGGATGCTTGAATCTAACATGTCATGGAGAAGATCCTTAAATTTGGATATGGGAAATGTAGGCAGAGAAAATTTGGATTTGCACACAGGGAAGGAAAATCTGGTGTTAGAGGAAAGAATAGTAGGTCCCACCTATAAAGACACTTGGTTGAAAGAGGCAGTAAATATTTGCATGTCATTACCTGAGGAAACACGACGCCCAAGTACATCTATTTCAAAATGCACTTCTGCTGGGTCAAAGCTGAATGCCAACTCTGTAGAGAAGAAAAACAAAAAAGGCCGGGCAACTGCTCGGGGTGGAAACATCAGTAATAGTCAAAGTTCATCAATAAGGTCACAAATGGTTGGTTCAAAGAGAAAACATTCTGGCACCTTTAATCGTGCAGATGACAGCAGCATGAATCTGATTGGAGTGCAATATAATGGACTGCCCTCATACCAAACTAGCATTTGCCTTCAGTTTCCAAAAATACAGAAGAAAAGAACTGAAACGGGGAATGCAACAAAAGAAGTCCAACAGACATGCCCTCAGGAAGATGCTCTAGGACATCCATATGCATCAAGCTCCAGCTGCTGGACTTATGGTTCTGGATATAATACAGCTAGAGTCCCAGCCACAAGTGGATCGACAGAAAAATTAAAAATTGATAATACTCAAACATTCAATGAGTTCGTCTTGTCTTTGAAAAGGCTGGCAGAAAGATCTCAAACCTCTACTTGTGATCATGGTTCTCTAACCAGAATTAGAAACTGTGATACTGAACCAAATTATACTGCAAAACAAGTAGGCGTCTCTGGCAGAGAAACATTTGGGGATGCAATTGGTGCTTTAGTTGCAGAGACATGTACACCACCCACAAAAAAGAAGCGGAATAGAAAGAAAAGTGTTCCTTCCAGTTCAGCACATTCTACCACAAATGAGATGCTACAGAACCATAATTTTACATTGGAAAATTACCCTCTGCCAATGGGGAAGCCATCAGACATTGTTCCTGAAGTACTATGGAACACCATGAACAATATTGATGCATTAACATTGCAATTTAGACAACTAAACTTAAACACAGAAGTCAGAGACCTTGCATTTCATGAGCAGAATGCACTTGTCCCTTATAAACAGCAAAACAGCCTTATCCATGGAGATGGGGTCATCGTTCCCTTTCACATTAAGAAACAGCATCTACGACCAAAGGTCGACCTTGATGATGAGACTGATAGAGTGTGGAAGCTTTTGCTGTTAGATATAAACAGTCATGGGATTGATGGAACAGATGAAGATAAGGCAAAGTGGTGGGAAGAAGAACGAAATGTGTTTCGAGGACGAGCCGACTCTTTTATTGCACGAATGCATCTTGTACAAGGAGACAGACGATTTTCTCGATGGAAAGGATCAGTTGTGGATTCAGTGGTTGGAGTTTTCCTCACCCAAAATGTCACTGACCATCTTTCCAGCTCTGCATTCATGTCCCTTGCTGCTCGATTTCCCAAAATTTCAAGCAGCATGTGCAAAACACACCATGCAGAAGACACAAGACTGGTAGTCAACAAACCACAAGTGCATATAGTGGAACCGGAAGAGAGCACTGAATGGGATGTAAAATTATTGAATCAATCTGTTTATGACCAGCCTTCTCCAACAATAGATATAGTTGAGCATTCTCGAGAAAAAGAAGCCTTCAACAGCAATGAATCCTGTGGAACTACCAGCAGTGTAATTAGCTTAACAGATGAATCAAACTCCAGATTGTCAGAATTACCTCAAAAGAATATTAAGGAACACTGTAGTCCAATGAGAAGTGGACTACTTAGTGCTTCAATTGAGGAAGGAGAAGAAAAATCATGTTACGATGGTGATAGGAAAGAGTTAAATGACATAGTTTCATCCCAAGGCTCTGTTATTTCATCTCAAATATCTGGAGATTTTTCAAATGATCAAAATCCTGAGAAAATAGGATCATGCTCAGATAGCAACTCAGAAGTAGAAGTTTTGTCCAGCACAGCAAAGTACAACCATTTTGGTAGCAACACTTCCTTCAGTAAACTCCTCGAAATGGTTAGTTCAACCAAGTTTTATGCAGATAACAGTCAAAAAAGCGAATCAATTGAGAACTTAAGAGATGCATATGATCAACATATACACAGGCAGCATAACAACACAATAGAAAGCTTGAAAAAATCAAGTGCTACTCAGGGCTCTGCAGAAGCATCCATCATCCTATCTGATGAATATACTTTGAAACTCGCCCCCAACTTAGGAATGCTTGATGTTAACTGCTTTGATCCTTTCAAAACAGAAGCATCAACAAGTGACTTCTTAAAAAAAAAGGATGAAAATAGCATGAACAGATCTAGTCTTCAAACAACAGAACCTGGAGGCCAAGTTGCAACTACCCATTCTCAAAGTATTGTATCTCAAGTCCATCCTCAGGAACAAAGCAATCACCAGCAGCAAAGTTTTTTCAACATTTCTGGACAAACTCAAGATCTTATGCAGAAAGGAAGGGGGTCAGATCTTGGTGAGCAAAAAAATGCCATGAGGAATGGAACCAATGAGATAAGTTCTGCCCCAATAAAATTTAAGAGCAAGGAACAAGAAAAAGAGAAAAAGGATGATTTTGACTGGGATAGTTTAAGAATTGAAGCACAGGCTAAGGCTGGGAAAAGAGAAAAGACAGATAACACCATGGATTCTTTGGACTGGGATGCTGTGAGATGTGCAGATGTCAGTGAAATCGCTGAGACCATCAAAGAAAGGGGCATGAACAACAGGCTTGCAGATCGTATTAAGAATTTCTTAAATCGATTGGTTGAAGAACATGGAAGCATTGACCTTGAATGGCTTAGAGACGTTCCACCTGACAAAGCAAAAGAATACTTGCTCAGCATAAGAGGATTGGGACTAAAAAGTGTGGAATGTGTGCGGCTTTTAACACTGCACCATCTTGCCTTCCCGGTAGACACAAATGTCGGACGTATAGCAGTACGACTGGGATGGGTCCCTCTACAGCCACTGCCTGAGTCACTGCAGTTGCATCTCCTAGAATTGTACCCAGTGTTGGAGTCAATACAAAAATATCTCTGGCCTCGACTATGCAAGCTAGATCAGGAAACACTATATGAGCTACATTACCAGATGATTACATTTGGAAAGGTCTTCTGTACAAAAAGCAAACCAAATTGTAATGCATGCCCAATGAGAGGAGAATGTAGACACTTCGCTAGTGCATTTGCAAGTGCAAGGCTTGCACTGCCTGGACCAGAGCAGAAGAGTATAGTTAGCACAACTGGAAATAGTGTGATTGACCAGAACCCATCTGAAATCATCAGTCAGTTGCACTTGCCTCCCCCTGAGAGCACGGCCCAAGCAGATGATATTCAACTAACAGAAGTGAGCAGACAGTTGGAATCAAAATCTGAAATAAATATTTGCCAACCTATCATTGAAGAGCCCACAACTCCAGAGCCAGAATGCTTGCAAGTATCACAAACTGATATAGAGGATGCTTTCTATGAGGATTTATGTGAAATTCCAACCATCAATCTTAACATAGAAGAGTTCACTATGAATTTACAAAATTACATGCAAGAAAAAATGGAACTTCAAGAAGCTGAAATGTCAAAGGCATTGGTTGCTTTGAATCCAGAAGCTGCTTCCATTCCTATGCCCAAGCTAAAGAATGTGAGCCGATTACGAACAGAGCATTGTGTTTATGAACTCCCAGATACGCATCCTCTTCTCCAAGGGTGGGACACACGAGAGCCTGATGATCCAGGCAAATATCTTCTTGCTATATGGACTCCAGGTGAGACAGCAAATTCTATACAGCCACCAGAAAGCAAATGCAGCTCTCAAGAAGAATGTGGCCAACTCTGTAATGAGAATGAATGTTTCTCGTGCAACAGTTTCCGTGAAGCAAATTCTCAGATAGTTAGAGGGACACTCCTGATACCATGTCGAACAGCTACACGGGGGAGCTTTCCACTGAATGGCACCTATTTCCAAGTCAATGAGGTATTTGCTGACCATGACTCAAGTCTCAACCCAATTAGTGTGCCTCGAAGTTGGATCTGGAACCTCAACAGGCGAACAGTATATTTTGGAACCTCCGTAACAACAATATTTAAAGGTTTAACAACACAAGAAATTCAACAATGCTTTTGGAGAGGGTATGTCTGTGTGCGGGGGTTTGACAGGGAAGCACGAGCACCCCGTCCTCTGATGGCTAGACTACATTTCCCAGCTAGCAAGTTGGCCAAGACAAAAGAGAGGACAAAAAAGGAGTCGAGTTCAACGGCAAAATCACGGGGATCGAAACCAAATCCAGAACAGCCGGAATTGATTGCCAACAGTAGCAACCTTCTACAGACGGGAAGAGACTGA

Predicted protein sequences of Glyma13g21460

Limit To All Plant Sequences

>Glyma13g21460.2   sequence type=predicted peptide   gene model=Glyma13g21460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVGEMDRKEPQVEVPWSPGTPIKAVPMKPMPICSPGERNQMGHHANGAVACDEFSHGQDKIGGLGDGSNVATDGGKTCEPTDSDAVSNYSKLGFCEQLFAVEAESRNSSVTQGNNDGLKNPFVPSFILDNVQDPQETYIACCSMKTSQDTLFTLDNANKEGIKIASMQVNMEEKDPGGEERNAPANKLDNNVPPNSKELCDPAMEFAAVSSPLKENHNPDKGSSHDTDLNKTPQQKPRRRKHRPKVIKEGKPKRTRKPATPKPVQPKENTPVKRKYVRKNTVNKTSTPPTEEARELSKEMSCKRSLNFDIGTTDESSAAIDNTTALLGKENGILVQETNVGSAFDLNTSMKQASNSYMSLPEDKQALNTSPSRRKSSGTKPEENTPPKRKYVRRKGVNKTSAPPIEVPGNLTKETMSASAQTSCTESIFDERARDQSYTVKENPTGHPGSEIGVLMKEMNVGLAYDLNTSRKQALNDDATLPKDTQAPSSSSKINLPGTKRKENLTGKRKNAGKKGSNPSPIPPTEITELTEARMLESNMSWRRSLNLDMGNVGRENLDLHTGKENLVLEERIVGPTYKDTWLKEAVNICMSLPEETRRPSTSISKCTSAGSKLNANSVEKKNKKGRATARGGNISNSQSSSIRSQMVGSKRKHSGTFNRADDSSMNLIGVQYNGLPSYQTSICLQFPKIQKKRTETGNATKEVQQTCPQEDALGHPYASSSSCWTYGSGYNTARVPATSGSTEKLKIDNTQTFNEFVLSLKRLAERSQTSTCDHGSLTRIRNCDTEPNYTAKQVGVSGRETFGDAIGALVAETCTPPTKKKRNRKKSVPSSSAHSTTNEMLQNHNFTLENYPLPMGKPSDIVPEVLWNTMNNIDALTLQFRQLNLNTEVRDLAFHEQNALVPYKQQNSLIHGDGVIVPFHIKKQHLRPKVDLDDETDRVWKLLLLDINSHGIDGTDEDKAKWWEEERNVFRGRADSFIARMHLVQGDRRFSRWKGSVVDSVVGVFLTQNVTDHLSSSAFMSLAARFPKISSSMCKTHHAEDTRLVVNKPQVHIVEPEESTEWDVKLLNQSVYDQPSPTIDIVEHSREKEAFNSNESCGTTSSVISLTDESNSRLSELPQKNIKEHCSPMRSGLLSASIEEGEEKSCYDGDRKELNDIVSSQGSVISSQISGDFSNDQNPEKIGSCSDSNSEVEVLSSTAKYNHFGSNTSFSKLLEMVSSTKFYADNSQKSESIENLRDAYDQHIHRQHNNTIESLKKSSATQGSAEASIILSDEYTLKLAPNLGMLDVNCFDPFKTEASTSDFLKKKDENSMNRSSLQTTEPGGQVATTHSQSIVSQVHPQEQSNHQQQSFFNISGQTQDLMQKGRGSDLGEQKNAMRNGTNEISSAPIKFKSKEQEKEKKDDFDWDSLRIEAQAKAGKREKTDNTMDSLDWDAVRCADVSEIAETIKERGMNNRLADRIKNFLNRLVEEHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQETLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEQKSIVSTTGNSVIDQNPSEIISQLHLPPPESTAQADDIQLTEVSRQLESKSEINICQPIIEEPTTPEPECLQVSQTDIEDAFYEDLCEIPTINLNIEEFTMNLQNYMQEKMELQEAEMSKALVALNPEAASIPMPKLKNVSRLRTEHCVYELPDTHPLLQGWDTREPDDPGKYLLAIWTPGETANSIQPPESKCSSQEECGQLCNENECFSCNSFREANSQIVRGTLLIPCRTATRGSFPLNGTYFQVNEVFADHDSSLNPISVPRSWIWNLNRRTVYFGTSVTTIFKGLTTQEIQQCFWRGYVCVRGFDREARAPRPLMARLHFPASKLAKTKERTKKESSSTAKSRGSKPNPEQPELIANSSNLLQTGRD*

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