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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G52940 | AT | Annotation by Michelle Graham. TAIR10: Ergosterol biosynthesis ERG4/ERG24 family | chr3:19630369-19633112 REVERSE LENGTH=369 | SoyBase | E_val: 0 | ISS |
| GO:0006084 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0016132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019745 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016628 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0050613 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: delta14-sterol reductase activity | SoyBase | N/A | ISS |
| KOG1435 | KOG | Sterol reductase/lamin B receptor | JGI | ISS | |
| PTHR21257 | Panther | STEROL REDUCTASE-RELATED | JGI | ISS | |
| PTHR21257:SF21 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01222 | PFAM | Ergosterol biosynthesis ERG4/ERG24 family | JGI | ISS | |
| UniRef100_E1AQY4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Delta14-sterol reductase n=12 Tax=Solanum RepID=E1AQY4_SOLLC | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LZF1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LZF1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g21450 not represented in the dataset |
Glyma13g21450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g07580 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g150900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g21450.2 sequence type=transcript gene model=Glyma13g21450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGAAAACGGTGTTCACGGGTAGTTCAGGTCCACGTTGGAATTTGCCCATCTAAAACCTCAATCTTTTACTGAAAAGTCTCAACTTTGAACTCACTCGAAGTGATGATGGAGTCACACGTGGATCTAGGTTTTCTCCTTCAAGCTCTCACTCCATCTTGGAACTCCGTTCCTTTGCTTGTGGGGTTCTTCACTTACTTGGCCGTTGCTGGATCCATTCTCCCTGGAAAACTTGTTCCTGGCGTTGCACTACTCGATGGAACTCGTCTACACTATTGCTGCAATGGTCTGCTCTCGCTTCTTCTGTTGGTTGCACTTCTCGGGATCGGTGCCAAGATGGGTTTTGTGTCTCCCACTGCCATATCAGACAGAGGACTTGAGCTGCTGTCCACAACTTTTGCCTTCAGTTTTCTTGTAACCCTGATATTGCATTTTTCCGGTTGCAAGTCACAAAGTAAAGGTTCATCACTAAAGCCTCATCTCAGTGGAAACCTGATACACGATTGGTGGTTTGGTATACAACTAAATCCACAGTTCATGGGTATCGACCTCAAAGCTGGAATGATGGGATGGCTACTTATCAATTTATCTATTCTTATGAAGAGCATTCAAGATGGTACTTTGAGCCAGTCAATGATTCTCTACCAGCTATTCTGTGCACTATACATCCTGGACTATTTTGTACATGAAGAGTACATGACATCCACCTGGGACATAATTGCAGAGAGACTGGGCTTCATGTTGGTCTTTGGAGATTTAGTGTGGATTCCTTTCTCTTTCAGCATACAGGGATGGTGGCTCTTGATGAACAGTGTGGAGTTAACACCAGCTGCCATTGTAGCTAATTGCTTTGTGTTCCTGATTGGATACATGGTATTTCGAGGAGCAAACAAGCAAAAGCATGTGTTCAAAAAGAATCCAAAGGCTCCTATCTGGGGTAAGCCTCCAAAAGTCATTGGTGGAAAGCTACTTGCTTCTGGTTATTGGGGTATTGCTAGACACTGTAATTACCTAGGGGATTTGATGCTTGCTCTCTCCTTTAGCTTACCATGTGGGATAAGTTCACCAATTCCATACTTCTATCCAATTTATCTTCTTATTCTGTTAATCTGGAGAGAGAGAAGGGATGAAGCTCGTTGCGCCGAGAAGTATAGAGAGATATGGGCCGAGTATCGTAAACTTGTTCCATGGAGAATATTGCCTTACGTTTATTAGGATGAAAAAAAAAAGGGCTTCACCATGAATTCTTCATCTTGCCGATGTTATTAAGCACTTCGATGTAAATTGGTTCTTGTTCTTGTGGTTTCAATCTTGGATCTTTTCTTATTGAGCCATGTAGCTGCAGGAGAGTGTTTCGAGGGATTTATCTTACCATCTATATTTGTGTATCATTATGCTGCAGCCTGCAGGCCTTCATTTTTCAATGGCCAACTCTTTTTGACTTGTTCTATTTGTTTTTAGATGAGAATTTCATGGTCAAAGCTCCTAGGCTTAAAAAAACAGTGTCATGTTCTATGGGAAGTGCAGGAAGCAATTCGGGGACTGCAGGAAGCAATTGCCTTTACATTGATATGCTCAATGGTACTTTAGGCCCTTTAATGTTCTTGCTTTTCATTTGTGAGTTATTATTGGCCCCATTTCATTTGCTATTGGCTCCTACCAAGGGGTTGACTCGTTTTTTTATTCTCAAATTGTCTTTCCCACAAAATCATGATTCTGTTGGATAGGATACACCGGAATCATAATTATGTTGTGCATTCATTTTTGCACCTCCATAACACAACGGAATTTCGTTGTATAATGTTTTTGTCAACTCAGATATTACAACAGAATCATGATTCCGTTGTGGTTTTTTTTGCATCCCCCTTAAAACAACAGAACAATGATTCTGATGTATTGTTTTTTTTTTAAAAATTACAAAAAAAATATATTTGGTGTTTTTTATTGATTGAACATTGCAATACTGTATTTATTGACTGAACACTACTTTTTTCTAAAACA
>Glyma13g21450.1 sequence type=CDS gene model=Glyma13g21450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGAGTCACACGTGGATCTAGGTTTTCTCCTTCAAGCTCTCACTCCATCTTGGAACTCCGTTCCTTTGCTTGTGGGGTTCTTCACTTACTTGGCCGTTGCTGGATCCATTCTCCCTGGAAAACTTGTTCCTGGCGTTGCACTACTCGATGGAACTCGTCTACACTATTGCTGCAATGGTCTGCTCTCGCTTCTTCTGTTGGTTGCACTTCTCGGGATCGGTGCCAAGATGGGTTTTGTGTCTCCCACTGCCATATCAGACAGAGGACTTGAGCTGCTGTCCACAACTTTTGCCTTCAGTTTTCTTGTAACCCTGATATTGCATTTTTCCGGTTGCAAGTCACAAAGTAAAGGTTCATCACTAAAGCCTCATCTCAGTGGAAACCTGATACACGATTGGTGGTTTGGTATACAACTAAATCCACAGTTCATGGGTATCGACCTCAAATTTTTCTTTGTTAGAGCTGGAATGATGGGATGGCTACTTATCAATTTATCTATTCTTATGAAGAGCATTCAAGATGGTACTTTGAGCCAGTCAATGATTCTCTACCAGCTATTCTGTGCACTATACATCCTGGACTATTTTGTACATGAAGAGTACATGACATCCACCTGGGACATAATTGCAGAGAGACTGGGCTTCATGTTGGTCTTTGGAGATTTAGTGTGGATTCCTTTCTCTTTCAGCATACAGGGATGGTGGCTCTTGATGAACAGTGTGGAGTTAACACCAGCTGCCATTGTAGCTAATTGCTTTGTGTTCCTGATTGGATACATGGTATTTCGAGGAGCAAACAAGCAAAAGCATGTGTTCAAAAAGAATCCAAAGGCTCCTATCTGGGGTAAGCCTCCAAAAGTCATTGGTGGAAAGCTACTTGCTTCTGGTTATTGGGGTATTGCTAGACACTGTAATTACCTAGGGGATTTGATGCTTGCTCTCTCCTTTAGCTTACCATGTGGGATAAGTTCACCAATTCCATACTTCTATCCAATTTATCTTCTTATTCTGTTAATCTGGAGAGAGAGAAGGGATGAAGCTCGTTGCGCCGAGAAGTATAGAGAGATATGGGCCGAGTATCGTAAACTTGTTCCATGGAGAATATTGCCTTACGTTTATTAG >Glyma13g21450.2 sequence type=CDS gene model=Glyma13g21450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGAGTCACACGTGGATCTAGGTTTTCTCCTTCAAGCTCTCACTCCATCTTGGAACTCCGTTCCTTTGCTTGTGGGGTTCTTCACTTACTTGGCCGTTGCTGGATCCATTCTCCCTGGAAAACTTGTTCCTGGCGTTGCACTACTCGATGGAACTCGTCTACACTATTGCTGCAATGGTCTGCTCTCGCTTCTTCTGTTGGTTGCACTTCTCGGGATCGGTGCCAAGATGGGTTTTGTGTCTCCCACTGCCATATCAGACAGAGGACTTGAGCTGCTGTCCACAACTTTTGCCTTCAGTTTTCTTGTAACCCTGATATTGCATTTTTCCGGTTGCAAGTCACAAAGTAAAGGTTCATCACTAAAGCCTCATCTCAGTGGAAACCTGATACACGATTGGTGGTTTGGTATACAACTAAATCCACAGTTCATGGGTATCGACCTCAAAGCTGGAATGATGGGATGGCTACTTATCAATTTATCTATTCTTATGAAGAGCATTCAAGATGGTACTTTGAGCCAGTCAATGATTCTCTACCAGCTATTCTGTGCACTATACATCCTGGACTATTTTGTACATGAAGAGTACATGACATCCACCTGGGACATAATTGCAGAGAGACTGGGCTTCATGTTGGTCTTTGGAGATTTAGTGTGGATTCCTTTCTCTTTCAGCATACAGGGATGGTGGCTCTTGATGAACAGTGTGGAGTTAACACCAGCTGCCATTGTAGCTAATTGCTTTGTGTTCCTGATTGGATACATGGTATTTCGAGGAGCAAACAAGCAAAAGCATGTGTTCAAAAAGAATCCAAAGGCTCCTATCTGGGGTAAGCCTCCAAAAGTCATTGGTGGAAAGCTACTTGCTTCTGGTTATTGGGGTATTGCTAGACACTGTAATTACCTAGGGGATTTGATGCTTGCTCTCTCCTTTAGCTTACCATGTGGGATAAGTTCACCAATTCCATACTTCTATCCAATTTATCTTCTTATTCTGTTAATCTGGAGAGAGAGAAGGGATGAAGCTCGTTGCGCCGAGAAGTATAGAGAGATATGGGCCGAGTATCGTAAACTTGTTCCATGGAGAATATTGCCTTACGTTTATTAG
>Glyma13g21450.1 sequence type=predicted peptide gene model=Glyma13g21450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMESHVDLGFLLQALTPSWNSVPLLVGFFTYLAVAGSILPGKLVPGVALLDGTRLHYCCNGLLSLLLLVALLGIGAKMGFVSPTAISDRGLELLSTTFAFSFLVTLILHFSGCKSQSKGSSLKPHLSGNLIHDWWFGIQLNPQFMGIDLKFFFVRAGMMGWLLINLSILMKSIQDGTLSQSMILYQLFCALYILDYFVHEEYMTSTWDIIAERLGFMLVFGDLVWIPFSFSIQGWWLLMNSVELTPAAIVANCFVFLIGYMVFRGANKQKHVFKKNPKAPIWGKPPKVIGGKLLASGYWGIARHCNYLGDLMLALSFSLPCGISSPIPYFYPIYLLILLIWRERRDEARCAEKYREIWAEYRKLVPWRILPYVY* >Glyma13g21450.2 sequence type=predicted peptide gene model=Glyma13g21450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMESHVDLGFLLQALTPSWNSVPLLVGFFTYLAVAGSILPGKLVPGVALLDGTRLHYCCNGLLSLLLLVALLGIGAKMGFVSPTAISDRGLELLSTTFAFSFLVTLILHFSGCKSQSKGSSLKPHLSGNLIHDWWFGIQLNPQFMGIDLKAGMMGWLLINLSILMKSIQDGTLSQSMILYQLFCALYILDYFVHEEYMTSTWDIIAERLGFMLVFGDLVWIPFSFSIQGWWLLMNSVELTPAAIVANCFVFLIGYMVFRGANKQKHVFKKNPKAPIWGKPPKVIGGKLLASGYWGIARHCNYLGDLMLALSFSLPCGISSPIPYFYPIYLLILLIWRERRDEARCAEKYREIWAEYRKLVPWRILPYVY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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