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Report for Sequence Feature Glyma13g21440

Feature Type:gene_model
Chromosome:Gm13
Start:24947609
stop:24954892
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g21440
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03760AT Annotation by Michelle Graham. TAIR10: Nucleotide-diphospho-sugar transferases superfamily protein | chr5:985910-990087 REVERSE LENGTH=533 SoyBaseE_val: 0ISS
GO:0006816GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion transport SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0009294GO-bp Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009736GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway SoyBaseN/AISS
GO:0042546GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
GO:0051753GO-mf Annotation by Michelle Graham. GO Molecular Function: mannan synthase activity SoyBaseN/AISS
PTHR10587Panther N-ACETYLGLUCOSAMINYLTRANSFERASE-RELATED JGI ISS
PTHR10587:SF34Panther MANNAN SYNTHASE JGI ISS
PF00535PFAM Glycosyl transferase family 2 JGI ISS
UniRef100_E4MX95UniRef Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-17-G12 n=1 Tax=Eutrema halophilum RepID=E4MX95_THEHA SoyBaseE_val: 0ISS
UniRef100_I1LZF0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZF0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g21440
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g21440
ParalogEvidenceComments
Glyma10g07560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g21440 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g150700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g21440
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g21440
>Glyma13g21440.1   sequence type=CDS   gene model=Glyma13g21440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCGTTCCAAGGTGACAGGGATGACATTTCCTACCAAATGGGTTTGATTTGGAGCCAAGTGAAGGAGCCAGTGATCGTGCCAATGCTGAGAGTTGCAGTGTTTCTGTGCTTGGCCATGTCGTTGATGATGCTGGTCGAGAGGGTGTACATGGGCATTGTCATTTGCTTGGTGAAGCTGTTTAGTCGAAGACCCGAGAAGCGTTACAAGTGGGAGCCTATGAAGGACGATGTTGAGTTGGGAAACTCTAGCTATCCCATGGTTTTGGTCCAAGTCCCAATGTACAACGAAAGAGAGGTTTATCAGCTATCAATCGGTGCTGCTTGTGGCCTTTCTTGGCCTTCAGACAGAATCATCATACAAGTTCTTGATGATTCTACTAACCCAACAATCAAGGAGCTGGTGCAAATGGAATGTAGTAGATGGGCGAGCAAAGGGGTGAACATAAAGTACGAGGTGAGGGACAACAGAGACGGGTACAAAGCAGGGGCTCTGAAAGAAGGCATGAAACGCAGCTACGTGAAGCAATGTGACTATGTTGCCATCTTTGACGCCGATTTTCAACCGGAGCCTGATTTCCTCTGGCGAACTGTCCCATTCCTTGTCAACAACCCTGAACTTGGTCTCGTTCAGGCACGCTGGAAGTTTGTGAATGCCAATGAATGTTTGATGACCAGGATGCAAGAGATGTCACTGGATTACCATTTCACTGTGGAACAAGAAGTGGGGTCTTGCACTTACGCCTTCTTTGGCTTCAACGGAACTGCTGGTGTATGGAGAATTTCGGCGTTGTATGAGTCTGGAGGGTGGAATCATAGGACCACAGTGGAAGATATGGACCTGGCTGTCCGAGCCAGTCTCAGAGGATGGAAATTCTTGTACCTACCCAATTTGAAGGTTAAAAACGAATTGCCAAGTACTTTGAACGCCTACCGCTTCCAACAGCACAGGTGGTCTTGTGGACCAGCCAATCTTTTCATGAAAATGTTCATGGAGATTATGAGAAACAGGAAGGTGTCCTTGTATAAGAAGATATATGTGATTTACAGCTTCTTCTTTGTCCGGAAGGTCGTGGCCCACCTCAACACTTTTATGTTCTATTGTATTGTGTTACCTGCTACTGTTGTGGTGCCTGAGGTGGTGGTCCCCAAGTGGGGTGCTGTGTACATCCCTTCCATCATCACACTCCTAAATGCTGTTGGAACTCCAAGGTCACTCCACTTGCTGGTCTTCTGGATTCTCTTTGAGAATACCATGTCTCTGCATCGAACAAAGGCAACGATTATTGGTCTACTAGAGGGTAGTCGAGCGAATGAATGGATTGTCACTCAAAAGGGTAAACCACCCAAGAGTCGGTTTAGGATAAGGATTCATCACATGTTGGAACTTCTTGTTGGATTCTACCTCTTCTTCTGTGGCTGCTATGATATTATGTTCGGGAAAAACCGCTACTACATATTCCTATACATCCAATCAATTGCTTTCTTCATCATGGCCTTTGGATATGTTGGTATTTTCGATCCCAACACCTAG
Predicted protein sequences of Glyma13g21440
>Glyma13g21440.1   sequence type=predicted peptide   gene model=Glyma13g21440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESFQGDRDDISYQMGLIWSQVKEPVIVPMLRVAVFLCLAMSLMMLVERVYMGIVICLVKLFSRRPEKRYKWEPMKDDVELGNSSYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTNPTIKELVQMECSRWASKGVNIKYEVRDNRDGYKAGALKEGMKRSYVKQCDYVAIFDADFQPEPDFLWRTVPFLVNNPELGLVQARWKFVNANECLMTRMQEMSLDYHFTVEQEVGSCTYAFFGFNGTAGVWRISALYESGGWNHRTTVEDMDLAVRASLRGWKFLYLPNLKVKNELPSTLNAYRFQQHRWSCGPANLFMKMFMEIMRNRKVSLYKKIYVIYSFFFVRKVVAHLNTFMFYCIVLPATVVVPEVVVPKWGAVYIPSIITLLNAVGTPRSLHLLVFWILFENTMSLHRTKATIIGLLEGSRANEWIVTQKGKPPKSRFRIRIHHMLELLVGFYLFFCGCYDIMFGKNRYYIFLYIQSIAFFIMAFGYVGIFDPNT*






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